View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-13 (Length: 910)
Name: NF1457-2-Insertion-13
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-13 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 792; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 7 - 910
Target Start/End: Complemental strand, 3702312 - 3701410
Alignment:
| Q |
7 |
atttttagcccctttctatgcaaatctttgattaaacacgatatatacatatgacataatgcatatcagacaaggtgttagcaaccaatcaagggtttga |
106 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
3702312 |
atttttagcccctttctctgcaaatctttgattaaacacg----gtacatatgacataatgcatatcagacaaggtgccagcaactaatccagggtttga |
3702217 |
T |
|
| Q |
107 |
aacgaataactttgatctacttcttgggtagggaaactatgtataaaaatataatatttctcttcttcttgagaagcttccatgttttttggattggttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702216 |
aacgaataactttgatctacttcttgggtagggaaactatgtataaaaatagaatacttctcttcttcttgagaagcttccatgttttttggattggttg |
3702117 |
T |
|
| Q |
207 |
tacttcatgtctttcaatttatgatatgccttaaaataatatgaagtgttaataccacacttacatcatgaaataaataaatagttaaaacttgatacca |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3702116 |
tacttcatgtctttcaatttatgatatgccttaaaataatatgaagtgttaataccacacttaaatcatgaaataaataaatagttaaaacttgatacca |
3702017 |
T |
|
| Q |
307 |
ttaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaactt--agagtgttgaacatcttttgtg |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
3702016 |
ttaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaatttacagagtgttgaacatcttttgtg |
3701917 |
T |
|
| Q |
405 |
attcaccaattttgacatggttactaattaattctcttcaaacatataacaaaacttatttcctagaaacccccattgggagtatagtacaaatgtgaca |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
3701916 |
attcaccaattttgacatggttactaattaattctcttcaaacatataacaaaacttatttcctagaaacacctattgggagtatagtacaaacgtgaca |
3701817 |
T |
|
| Q |
505 |
ctaacattcccagcatgtaataaaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaatagatatagcaagtag |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701816 |
ctaacattcccagcatgtaataaaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaatagatatagcaagtag |
3701717 |
T |
|
| Q |
605 |
cagttgcgtgacgaactaa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacactaaaactttcacacgatttc |
703 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
3701716 |
cagttgcgtgaccaactaactcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacaccaaaactttcaca-gatttc |
3701618 |
T |
|
| Q |
704 |
tatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttc |
803 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701617 |
tatttgacaaatacatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttc |
3701518 |
T |
|
| Q |
804 |
cactcgagtaccgaattc-aaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatc |
902 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701517 |
cactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatc |
3701418 |
T |
|
| Q |
903 |
tcacttcg |
910 |
Q |
| |
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|||||||| |
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| T |
3701417 |
tcacttcg |
3701410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 585 - 907
Target Start/End: Complemental strand, 3708504 - 3708180
Alignment:
| Q |
585 |
aaaatagatatagcaagtagcagttgcgtgacgaactaa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacac |
683 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3708504 |
aaaatagatatagcaagtagcagttgtgtggcgaacaaactcgagtttaatagatcaagtattaaattattcaatgcaattatgcaaacattatagacac |
3708405 |
T |
|
| Q |
684 |
taaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttcc |
783 |
Q |
| |
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|||||| ||||| |||||||||| |||||||| |||||||||| |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||| |
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| T |
3708404 |
caaaactctcacatgatttctattcgacaaatacatattccctcgattcttttcttctttgcacagctttccctataaaacgttgataattgaaatttcc |
3708305 |
T |
|
| Q |
784 |
atttacaacgaaaagttttccactcgagtaccgaattca-aaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagct |
882 |
Q |
| |
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||||| |||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3708304 |
atttataacgaaaagtttgctactcgagtaccgaattcacaaagtgctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagct |
3708205 |
T |
|
| Q |
883 |
cttcaattctttgtcgaatctcact |
907 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3708204 |
cttcaattctttgtcgaatctcact |
3708180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 734 - 907
Target Start/End: Original strand, 3769842 - 3770015
Alignment:
| Q |
734 |
tttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaa-gagctct |
832 |
Q |
| |
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||||||||||||||||||| ||| ||||||| |||| ||||||||||| ||| || |||||||||||||| |||||||| ||||||||| | ||||| |
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| T |
3769842 |
tttcttctttgcatagctttcccg-taaaacgtaaataaatgaaatttccaattataaggaaaagttttccacacgagtaccaaattcaaaaagtgctct |
3769940 |
T |
|
| Q |
833 |
tgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcact |
907 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3769941 |
tgtaaaggacccatctcctgctaatgcacaagctgcttcatcttttagctcttcaattctttgtcgaatctcact |
3770015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 667 - 907
Target Start/End: Complemental strand, 3719929 - 3719689
Alignment:
| Q |
667 |
gcaaacattatagacactaaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaac-g |
765 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||| ||||| || | |||||| |||||| ||||||| |||||||||| || ||||| | |
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| T |
3719929 |
gcaaacattatagacactaaaactctcaca--atttctattcgacaattacacattcccactattcatttcttcactgcatagcttttcctgtaaaaatg |
3719832 |
T |
|
| Q |
766 |
acgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaga-gctcttgtagaggacccatcttctgctaatgcacaag |
864 |
Q |
| |
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| |||| | |||||||| |||| ||| | |||||| | | | |||| || |||||| || | || |||||||||||||||||||||||||||||||||| |
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| T |
3719831 |
tcaataaattaaatttccttttataacaacaagtttcctatttgagttccaaattcagaaaatgcccttgtagaggacccatcttctgctaatgcacaag |
3719732 |
T |
|
| Q |
865 |
ctgcatcatctttaagctcttcaattctttgtcgaatctcact |
907 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
3719731 |
ctgcatcatttttaagctcttccattctttgtcgaatctcact |
3719689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 832 - 910
Target Start/End: Original strand, 3777610 - 3777688
Alignment:
| Q |
832 |
ttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcg |
910 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
3777610 |
ttgtagaggacccatcttctgctaatgcaccagcagcaacatctttaagatcttcaattctttgtcgaatctcacttcg |
3777688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 285 - 422
Target Start/End: Complemental strand, 3720340 - 3720201
Alignment:
| Q |
285 |
aaatagttaaaacttgataccattaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaactt-- |
382 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||| | |
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| T |
3720340 |
aaatagtaaaaacttgataccattaaaagttataattcttggtcctctgagggacaacagtcttccaaggggc-aacaaattgttaccaagaaaaggtta |
3720242 |
T |
|
| Q |
383 |
-agagtgttgaacatcttttgtgattcaccaattttgacat |
422 |
Q |
| |
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| ||| ||||||||||||||||||||| | ||||||||| |
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| T |
3720241 |
catagtcttgaacatcttttgtgattcaaaatttttgacat |
3720201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 33004851 - 33004916
Alignment:
| Q |
831 |
cttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgt |
896 |
Q |
| |
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||||| || ||||||||||||||||||||||||| | | ||| |||||||||||||||||||||| |
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| T |
33004851 |
cttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgt |
33004916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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