View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457-2-Insertion-14 (Length: 904)
Name: NF1457-2-Insertion-14
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
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| [»] chr8 (3 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 8 - 904
Target Start/End: Original strand, 39210498 - 39211407
Alignment:
| Q |
8 |
ttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatctgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210498 |
ttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatctgc |
39210597 |
T |
|
| Q |
108 |
atttcgggctgagaaaattgaattaactgtcattgattgcctgggaatacttgaaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttt |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39210598 |
atttcaggctgagaaaattgaattaactgtcattgattgcctggaaatacttggaagttgtttacggatttttgtcatgatgaacggttgtcatgtgttt |
39210697 |
T |
|
| Q |
208 |
tttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaagaatagggttgtcta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39210698 |
tttctggtgaatggcaagcattgtgcagcgcgcataagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtcta |
39210797 |
T |
|
| Q |
308 |
tctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39210798 |
tctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctgg |
39210897 |
T |
|
| Q |
408 |
aagaattagtaa---tattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactcttttggt |
504 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210898 |
aagaattagtaatagtattaattatgccacttcata-tttttgttttcaaagcattatagag-tggttctattctgagttgagaaatgtactcttttggt |
39210995 |
T |
|
| Q |
505 |
tgtgtgtactttttaccactttagtgatctgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttctgctaccaag |
604 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210996 |
tgtgtgtactttttaccactttagtgatttgatgataaagtaattaacaaattgtgagatgtactcttattatttgccttgtgtactttctgctaccaag |
39211095 |
T |
|
| Q |
605 |
ttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgttacttcatatgctatcaa--tttgagttcctg |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39211096 |
ttgggtattgaggaaatattatcattatctttggtatgagtatagtctttgatatgctatctatttgttacttcatatgctatcaatttttgagttcctg |
39211195 |
T |
|
| Q |
703 |
catctgagatcaattctcataattatgagatttgga--atattattctcccttatgaac-ttttcaattctttgcatataagaaaaacagtgcttcagtt |
799 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39211196 |
catctgagatcaattcttataattatgagatttggaatatattattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagtt |
39211295 |
T |
|
| Q |
800 |
atgtacttcataagctatca--tttcatcctgcatctcgtac-attaag-acatgtgttaattgccctgcagctgttacatcca--tttagtag-aaaaa |
892 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
39211296 |
atgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaa |
39211395 |
T |
|
| Q |
893 |
atgaaacaaatt |
904 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39211396 |
atgaaacaaatt |
39211407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 627; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 62 - 904
Target Start/End: Complemental strand, 27510379 - 27509533
Alignment:
| Q |
62 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggga-atacttg |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
27510379 |
ttgtctatatgcagaatttgaattggcttggcttttgtcaatctgcatttcgggctgggaaaactgaatcaactgtcattgattgcctgggctatacttg |
27510280 |
T |
|
| Q |
161 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
260 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510279 |
gaagttgtttacggatttttgtcatga---acagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
27510183 |
T |
|
| Q |
261 |
aagatcaaattaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510182 |
aagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa |
27510083 |
T |
|
| Q |
361 |
gcattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcatt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
27510082 |
gcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattagtaatattaattatgcggcttcatat-ttttgttttcaaagcatt |
27509984 |
T |
|
| Q |
461 |
atagagttggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatctgatgataaagtaatcaacaaattgtg |
560 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27509983 |
atagag-tggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtg |
27509885 |
T |
|
| Q |
561 |
agatttactcttattatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatg |
660 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27509884 |
agatgtactcttattatttgccttgtgtactttctgctacgaagttgggtattaaggaaatactatcattatctttggtatgag--tagtctttgatatg |
27509787 |
T |
|
| Q |
661 |
ctatctatttgttacttcatatgctatcaa-tttgagttcctgcatctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaa |
758 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27509786 |
ctttctatttgttacttcatatgctatcaattttgagttcatgcatatgagttaaattctcataattatgagatttggaatattattcttcccttatgaa |
27509687 |
T |
|
| Q |
759 |
c-ttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatca--tttcatcctgcatctcgtac-attaag-acatgtgt |
853 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
27509686 |
ctttttcaattctttgcatataagaaaaatagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgt |
27509587 |
T |
|
| Q |
854 |
taattgccctgcagctgttacatcca--tttagtag-aaaaaatgaaacaaatt |
904 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
27509586 |
caattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatt |
27509533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 62 - 819
Target Start/End: Original strand, 27271016 - 27271782
Alignment:
| Q |
62 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaat-acttg |
160 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| | ||||| |
|
|
| T |
27271016 |
ttgtctatgtgcataatttgaattggcttggcttttgtcaatctgcatttccggctgtgaaaactgaattaactgtcattgatttcctgggctttacttg |
27271115 |
T |
|
| Q |
161 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
260 |
Q |
| |
|
|||||||| | ||| || |||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27271116 |
gaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtgcaacgcgcgtaagttgattgaaggagca |
27271215 |
T |
|
| Q |
261 |
aagatcaaattaggtgtcacaggagcagctaagaat--------agggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcc |
352 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27271216 |
aatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctcc |
27271315 |
T |
|
| Q |
353 |
atctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttc |
452 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
27271316 |
atcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaattagtaatattaatcatgtcgctttatattttt-gttttc |
27271414 |
T |
|
| Q |
453 |
aaagcattatagagttggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatctgatgataaagtaatcaac |
552 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
27271415 |
aaagcattagag---tggttctattctgagttgagaaatgtactctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaac |
27271511 |
T |
|
| Q |
553 |
aaattgtgagatttactcttattatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtct |
652 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| || ||| |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
27271512 |
aaattgtgagatgtactcttattagttgccttatgtactttctgctgccaagttcggcattaaggaaaaattatcattatctttggtataagtatagtct |
27271611 |
T |
|
| Q |
653 |
ttgatatgctatcta-tttgttacttcatatgctatcaa-tttgagttcctgcatctgagatcaattctcataattatgagatttggaatattattc-tc |
749 |
Q |
| |
|
| |||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||| || |
|
|
| T |
27271612 |
tcgatatgttatccattttgttacttcatatgctatcaattttgagttcctgcatctgaattcaattctcataattatgacatttgaaatatcattcttc |
27271711 |
T |
|
| Q |
750 |
ccttatgaac-ttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatca |
819 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||| ||| || ||| ||||||| ||| |||||||||| |
|
|
| T |
27271712 |
ccttatgaactttttaaattctttgcatacaagaaactcagcgcctcaattatgtatttcttaagctatca |
27271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 27510490 - 27510436
Alignment:
| Q |
11 |
aggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgt |
65 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510490 |
aggagttaacctcttctgacgttacttttggaatgttggtgagttgtatgattgt |
27510436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 306 - 819
Target Start/End: Complemental strand, 29707587 - 29707075
Alignment:
| Q |
306 |
tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttct |
405 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29707587 |
tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaatttaagtagtatttct |
29707488 |
T |
|
| Q |
406 |
agaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactcttttggtt |
505 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29707487 |
tgaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgtactctattggtt |
29707392 |
T |
|
| Q |
506 |
gtgtgtactttttaccactttagtgatctgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttctgctaccaagt |
605 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
29707391 |
gtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttctgctaccaagt |
29707292 |
T |
|
| Q |
606 |
tgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgttacttcatatgctatcaa-tttgagttcctgca |
704 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29707291 |
tgggtattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatctatttgttacttcatatgctatcaattttgagttcctgca |
29707192 |
T |
|
| Q |
705 |
tctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaac-ttttcaattctttgcatataagaaaaacagtgcttcagttatg |
802 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||| |||||| || || ||| ||||| |
|
|
| T |
29707191 |
tctgaattcaattctcataattatgagatttgaaatatcattcttcccttatgaactttttaaattctttgcatacaagaaacttagcgcctcaattatg |
29707092 |
T |
|
| Q |
803 |
tacttcataagctatca |
819 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
29707091 |
tacttcttaagctatca |
29707075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 479 - 819
Target Start/End: Complemental strand, 42093510 - 42093164
Alignment:
| Q |
479 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatctgatgataaagtaatcaacaaattgtgagatttactcttattatt |
578 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| | ||||| |||||| ||||||| ||||||||||||||||||||||| | || |||||| | |
|
|
| T |
42093510 |
tgagttgagaaatgtactgttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
42093411 |
T |
|
| Q |
579 |
tgccttgtgtac-tttctgctaccaa----gttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgtt |
673 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||||||| |||||| |||||||||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
42093410 |
tgccttatgtacttttctgctaccaagttggttgggtattaaggaaaaattatcattatctttggtagaag--tagtctttgatatgctatctatttgtt |
42093313 |
T |
|
| Q |
674 |
acttcatatgctatcaa-tttgagttcctgcatctgagatcaattctcataattatgagatttggaatatta-ttctcccttatgaacttt-tcaattct |
770 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| | || ||||||||||||||| |||||||| |
|
|
| T |
42093312 |
acttcttatgctatcaattttgagttcctgcatctgagttcatttctcataattatgagatttggaatatcatttgtcccttatgaactttctcaattct |
42093213 |
T |
|
| Q |
771 |
ttgcatataagaaaaacagtgcttcagttatgtacttcataagctatca |
819 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| | ||||||| |
|
|
| T |
42093212 |
ttgcatataagaaaaatagtgcttcaattatgtacttcaaatgctatca |
42093164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 173 - 416
Target Start/End: Original strand, 31949642 - 31949887
Alignment:
| Q |
173 |
ggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg--cagcgcgcgtaagttgattgaaggagcaaagatcaaat |
270 |
Q |
| |
|
|||||| ||||||||| || | ||||| ||||| ||||||||||| |||| | | |||| || ||| ||||||||||| | |||| |||||||||| |
|
|
| T |
31949642 |
ggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagtggccacctctgtgtgcaacgcccgtaagttgatggcaggaataaagatcaaac |
31949741 |
T |
|
| Q |
271 |
taggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggaga |
370 |
Q |
| |
|
| |||||||| ||||||| || |||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | ||||||| || |
|
|
| T |
31949742 |
ttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggtga |
31949841 |
T |
|
| Q |
371 |
aaatggtccatcttatcaatttaagcagtatttctagaagaattag |
416 |
Q |
| |
|
||||||||| ||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
31949842 |
aaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
31949887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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