View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-16 (Length: 480)
Name: NF1457-2-Insertion-16
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 3120474 - 3120946
Alignment:
| Q |
8 |
ataaataagcaactgattgcaaattaataagctattatcttattcaaaatgtaactacttgcaggtaagcataaatagaaaggttatttgacaatcatta |
107 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3120474 |
ataaataagcaactgaatgcaaattaataggctattatcttattcaaaatgtaactacttgcaggtaagcataaatagaaagattatttgacaatcatta |
3120573 |
T |
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| Q |
108 |
ccgttttatatccaaacatgcttttaraagtaggatcatcccacacaagtaaaagcactctcacaccttcttgtgatttggctttgagaagatcacctaa |
207 |
Q |
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| T |
3120574 |
ccgttttatatccaaacatgcttttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttgtgatttagctttgagaagatcacctaa |
3120673 |
T |
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| Q |
208 |
tgtacaatcttttccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaatatagaccaatcgacgagcctgacttattgca |
307 |
Q |
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| T |
3120674 |
tgtacaatcttttccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaatatagaccaatcgacgagcctgacttattgca |
3120773 |
T |
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| Q |
308 |
tcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctcaaaccaggaagacaaccttgtggaacatgagcat |
407 |
Q |
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| T |
3120774 |
tcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctcaaaccaggaagacaaccttgtggaacatgagcat |
3120873 |
T |
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| Q |
408 |
cttgataaagtgtaacttttcctccttttcgaagtggaaaatatgtagcaggaacgccttgataatcagaacc |
480 |
Q |
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| T |
3120874 |
cttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaacc |
3120946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 77 - 475
Target Start/End: Original strand, 3114686 - 3115085
Alignment:
| Q |
77 |
cataaatagaaaggttattt-gacaatcattaccgttttatatccaaacatgcttttaraagtaggatcatcccacacaagtaaaagcactctcacacct |
175 |
Q |
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||||||||||||| || ||| || |||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
3114686 |
cataaatagaaagttttttttgaagatcattactgttttatatccaagcatgctgttagaagtaggatcatcccacacaagtagaagcactctcacacct |
3114785 |
T |
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| Q |
176 |
tcttgtgatttggctttgagaagatcacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaa |
275 |
Q |
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| T |
3114786 |
tcttgtgatttagctttgagaagatcacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaa |
3114885 |
T |
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| Q |
276 |
tatagaccaatcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctcaa |
375 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||| |
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| T |
3114886 |
tatataccaatcgtcgcgcctgacttattgcatcaaagatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctcaa |
3114985 |
T |
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| Q |
376 |
accaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttcctccttttcgaagtggaaaatatgtagcaggaacgccttgataatca |
475 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||| ||||| |
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| T |
3114986 |
actaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatca |
3115085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 36842200 - 36842267
Alignment:
| Q |
398 |
acatgagcatcttgataaagtgtaacttttcctccttttcgaagtggaaaatatgtagcaggaacgcc |
465 |
Q |
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| T |
36842200 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
36842267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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