View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457-2-Insertion-17 (Length: 1186)

Name: NF1457-2-Insertion-17
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457-2-Insertion-17
NF1457-2-Insertion-17
[»] chr2 (4 HSPs)
chr2 (380-704)||(34377647-34377973)
chr2 (8-300)||(34378053-34378332)
chr2 (692-808)||(34377239-34377354)
chr2 (842-984)||(34377045-34377198)
[»] chr6 (2 HSPs)
chr6 (393-550)||(28629574-28629731)
chr6 (395-548)||(24796374-24796527)
[»] chr8 (2 HSPs)
chr8 (380-576)||(34536976-34537176)
chr8 (388-538)||(35507592-35507734)
[»] chr5 (2 HSPs)
chr5 (387-550)||(34196683-34196849)
chr5 (390-541)||(18430163-18430314)
[»] chr7 (2 HSPs)
chr7 (388-556)||(27545793-27545962)
chr7 (438-541)||(32795205-32795308)
[»] chr4 (2 HSPs)
chr4 (451-549)||(40071124-40071222)
chr4 (423-475)||(48089358-48089410)
[»] chr1 (2 HSPs)
chr1 (619-660)||(5328036-5328077)
chr1 (621-670)||(5328678-5328727)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 380 - 704
Target Start/End: Complemental strand, 34377973 - 34377647
Alignment:
Q  380 cccacatcttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggca 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  34377973 cccacatcttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaatattgacaccttgaagatatggacctttcctcctcggca 34377874  T
Q  480 gctagattctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagtt--ttttgttgttgttttcctccggataaaaaat 577  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34377873 gctaaattatatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagttttttttgttgttgttttcctccggataaaaaat 34377774  T
Q  578 gtatttagaaatgtattttattattaaacaaagttactttggggtcatttatcttatttagttgcaacactttagtattttattcttatttttattcaag 677  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34377773 gtatttagaaatgtattttattattaaacaaaattactttggggtcatttatcttatttagttgcaacactttagtattttattcttattttcattcaag 34377674  T
Q  678 ttctttatctttcaaaataaaccctcc 704  Q
    |||||||||||||||||||||||||||    
T  34377673 ttctttatctttcaaaataaaccctcc 34377647  T

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Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 34378332 - 34378053
Alignment:
Q  8 gtattctgatgtttctttttacgaggggatcttcttatacataattgatttgtcttatgatgtaagaataacagaattgttatacatcgtgccaaagtat 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34378332 gtattttgatgtttctttttacgaggggatcttcttatacataattgatttgtcttatgatgtaagaataacagaattgttatacatcgtgccaaagtat 34378233  T
Q  108 acaactttcattttttgtcatgacatgaaaatattggccattctaacaaaaattgaagacctagctagcaaagatgggttgaatttgggtagctaagaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34378232 acaactttcattttttgtcatgacatgaaaatattggccattctaacaaaaattgaagacctagctagc-aagatgggttgaatttgggtagctaagaaa 34378134  T
Q  208 aataggaagaaagagaggaagaaacgaaggaagagatgagaccatatactctatttaaatgaaagtgacgtagcaaattatgtggagaactag 300  Q
    ||||||||||||||||  ||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  34378133 aataggaagaaagagaaaaagaaacgaaggaagagatgag------------atttaaatgaaagtgacgtagcaaattatgtggagaactag 34378053  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 692 - 808
Target Start/End: Complemental strand, 34377354 - 34377239
Alignment:
Q  692 aaataaaccctccatatcaaccacttcttcttttctccaaaataacccnnnnnnntaaatcttcttattcctcttattcataagttgatcatcttctgtt 791  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  34377354 aaataaaccctccttatcaaccacttcttcttttctccaaaa-aacccaaaaaaataaatcttcttattcctcttattcataagttgatcatcttctgtt 34377256  T
Q  792 catttatttctctcata 808  Q
    |||||||||||||||||    
T  34377255 catttatttctctcata 34377239  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 842 - 984
Target Start/End: Complemental strand, 34377198 - 34377045
Alignment:
Q  842 agaggagataggataagtatgttaaacatcaaacaaa-tgacatgcagatgagttactttg-aaaaccttgtagtgcag--accctacc--aataataga 935  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||  |||||||||    
T  34377198 agagaagataggataaatatgttaaacatcaaacaaaatgacatgcagatgagttactttgaaaaaccttgtagtgcaggaaccctaccaaaataataga 34377099  T
Q  936 gt-agac-aatcta-gtgattat-tcc-ttgtatcctccttgtaaatacctcta 984  Q
    || |||| ||||||  ||||||| ||| |||| |||||||||||||||||||||    
T  34377098 gtaagacaaatctacatgattatatcctttgtctcctccttgtaaatacctcta 34377045  T

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Target: chr6 (Bit Score: 90; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 393 - 550
Target Start/End: Original strand, 28629574 - 28629731
Alignment:
Q  393 ggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggcagctagattctatc 492  Q
    ||||||||||  |||||||||||| ||| ||||||||| ||  ||||||| ||| || ||||||||||||||||||| ||||| ||| ||||||||||||    
T  28629574 ggaagacaatgcatgtgctgattggctggctaaatatggggttgacaacaatgaaactttgaagatatggacctctcttcctccgcaactagattctatc 28629673  T
Q  493 ttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagtttttt 550  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||||| |||||||    
T  28629674 ttgttcgccgactcctctggagtttttaggcaccaagttgcttagtcttttgtttttt 28629731  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 395 - 548
Target Start/End: Original strand, 24796374 - 24796527
Alignment:
Q  395 aagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggcagctagattctatctt 494  Q
    |||||||| ||||||| ||||||||| |||||||||| || ||| | ||||| |  ||||||||||  | |||| ||||||  ||  |||||||||||||    
T  24796374 aagacaatgaatgtgccgattgactggctaaatatgaagctgacgatattgatagtttgaagatataaatctcttctcctccacaattagattctatctt 24796473  T
Q  495 gttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagtttt 548  Q
     |||||| ||||||||| |  |||||| |||||| || ||| |||||| |||||    
T  24796474 tttcgccaactcctataaaaattttagacaccaaattacttcgtcttttgtttt 24796527  T

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Target: chr8 (Bit Score: 84; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 380 - 576
Target Start/End: Original strand, 34536976 - 34537176
Alignment:
Q  380 cccacatcttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggca 479  Q
    |||||| ||||| ||||| |||| ||||||| |||||  || ||||||||| ||| | |||||||||||| ||||||||||||| |||||||||||  ||    
T  34536976 cccacaccttgagggaaggcaatgaatgtgccgattggatggctaaatatggggctggcaacattgacactttgaagatatggatctctcctcctccaca 34537075  T
Q  480 gctagattctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtc----tttagttttttgttgttgttttcctccggataaaaa 575  Q
     |||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||    |||  |||||| || |||||||||||| ||||||||    
T  34537076 actagattctatcttgttcgccgactcctctagagtttttaggcaccgaattgcttagtcttttttttttttttttttattgttttcctcctgataaaaa 34537175  T
Q  576 a 576  Q
    |    
T  34537176 a 34537176  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 388 - 538
Target Start/End: Complemental strand, 35507734 - 35507592
Alignment:
Q  388 ttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggcagctagatt 487  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||||||||| |||||||||||||| ||||        | |||||||| || ||| |||||||    
T  35507734 ttgaaggaagacaatgaatgtgccgattggctggctaaatatgaggctgacaacattgacactttga--------atctctcctcttccgcaactagatt 35507643  T
Q  488 ctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagt 538  Q
    ||||||| ||||||||||||| |  | ||||||| || |||||||||||||    
T  35507642 ctatcttattcgccgactcctctgaaatttttagacaacaagttgcttagt 35507592  T

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Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 387 - 550
Target Start/End: Original strand, 34196683 - 34196849
Alignment:
Q  387 cttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcg---gcagcta 483  Q
    ||||| ||||| |||| ||||||  |||||  || ||||||||| ||| | |||||||||||| || ||||||||||||||||||||||    || ||||    
T  34196683 cttgagggaaggcaatgaatgtgtcgattggttggctaaatatggggctggcaacattgacactttaaagatatggacctctcctcctcctccgcggcta 34196782  T
Q  484 gattctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagtttttt 550  Q
    |||| ||||||||||||||||| || | |||||||||| |||||||||||||||||||| |||||||    
T  34196783 gattatatcttgttcgccgactactctggagtttttaggcaccaagttgcttagtcttttgtttttt 34196849  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 390 - 541
Target Start/End: Complemental strand, 18430314 - 18430163
Alignment:
Q  390 gaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggcagctagattct 489  Q
    ||||||||| ||| ||| ||| ||||  ||| ||||||| ||||| || ||||||||||| |||||||||||||| |||| |||||  || ||||||  |    
T  18430314 gaaggaagagaatgaatatgccgattagctggctaaatacgaggctgaaaacattgacactttgaagatatggacttctcttcctctacaactagatgtt 18430215  T
Q  490 atcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctt 541  Q
    |||||||| || ||||| | |  ||||||||| |||| || |||| ||||||    
T  18430214 atcttgttagcagactcttctgaagtttttaggcaccgagctgctaagtctt 18430163  T

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Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 388 - 556
Target Start/End: Original strand, 27545793 - 27545962
Alignment:
Q  388 ttgaaggaagacaataaatgtgctgattgactgcctaaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctcggcagctagatt 487  Q
    |||| ||||| |||| ||||||  |||||| ||  |||||||| | |||||||||||||||| | ||||||||||| ||||||||||  ||| |||||||    
T  27545793 ttgagggaaggcaatgaatgtgtcgattgattggttaaatatgggaccgacaacattgacacttcgaagatatggatctctcctcctttgcaactagatt 27545892  T
Q  488 ctatcttgttcgccgactcctat-agagtttttagtcaccaagttgcttagtctttagttttttgttgtt 556  Q
     |||||||||||| ||||||| | | ||||||||| |||| |||||||||||| || |||||||||||||    
T  27545893 ttatcttgttcgctgactcctctgaaagtttttaggcaccgagttgcttagtcctttgttttttgttgtt 27545962  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 438 - 541
Target Start/End: Complemental strand, 32795308 - 32795205
Alignment:
Q  438 caacattgacaccttgaagatatggacctctcctcctcggcagctagattctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttag 537  Q
    ||||||| || | |||||||||||||| |||| |||||  || ||| ||| |||||||||||||||||||| || ||||||||| |||| ||||||||||    
T  32795308 caacattaacgctttgaagatatggacatctcttcctccacaactaaattatatcttgttcgccgactcctctacagtttttaggcaccgagttgcttag 32795209  T
Q  538 tctt 541  Q
    ||||    
T  32795208 tctt 32795205  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 451 - 549
Target Start/End: Original strand, 40071124 - 40071222
Alignment:
Q  451 ttgaagatatggacctctcctcctcggcagctagattctatcttgttcgccgactcctatagagtttttagtcaccaagttgcttagtctttagttttt 549  Q
    ||||||||||| || ||| |||||| | ||||| |||||||||||||||||||||| |   |||||||||| |||  ||||||||||||||| ||||||    
T  40071124 ttgaagatatgaacatcttctcctccgaagctatattctatcttgttcgccgactcttcaggagtttttaggcacttagttgcttagtcttttgttttt 40071222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 48089358 - 48089410
Alignment:
Q  423 taaatatgaggccgacaacattgacaccttgaagatatggacctctcctcctc 475  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||||||||||||    
T  48089358 taaatatggggctgacaacattgacactttgaagatatgcacctctcctcctc 48089410  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 619 - 660
Target Start/End: Original strand, 5328036 - 5328077
Alignment:
Q  619 gggtcatttatcttatttagttgcaacactttagtattttat 660  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  5328036 gggtcatttatcttatttatttgtaacactttagtcttttat 5328077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 670
Target Start/End: Complemental strand, 5328727 - 5328678
Alignment:
Q  621 gtcatttatcttatttagttgcaacactttagtattttattcttattttt 670  Q
    ||||||||||||||||| ||| ||||||||||| ||||||  ||||||||    
T  5328727 gtcatttatcttatttacttgtaacactttagtcttttatctttattttt 5328678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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