View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-18 (Length: 482)
Name: NF1457-2-Insertion-18
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 43093773 - 43093296
Alignment:
| Q |
8 |
ttgatgagtacattgcatttcattttcggtaagttcatagttgtttaatagttttttatttgcaatttgatatggatggatacttatatgaatattagnn |
107 |
Q |
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| T |
43093773 |
ttgatgagtacattgcatttcattttcggtaagttcatagatgtttaatagttttttatttgtaatttgatatggttggatacttatatgaatatgagtt |
43093674 |
T |
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| Q |
108 |
nnnnnnnnnnnnnn---ccgtggtgattgttactagcatgtttattccatgtatctgtttcttccatgtgacgacatcacattttattaaaacttcaaaa |
204 |
Q |
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| T |
43093673 |
tttttttctttctttttccgtggtgattgttactagcatgtttcttccatgtatctgtttcttccatgtgacgacatcacattttattaaaacttcaaaa |
43093574 |
T |
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| Q |
205 |
ttgtatatcctacatagttaaagcttccccatacttgtcttaaatatgtagacgtcaaaagttttaatggacatcattgaatttctatgcagctacaaca |
304 |
Q |
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| T |
43093573 |
ttctatatcctacatagttaaagcttcctcatacttgtcttaaatatgtagacgtctaaagttttaatggacatcattgaatttctatgcagctacaaca |
43093474 |
T |
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| Q |
305 |
ttgacaagttggcatcttcttgttacattttgttctcttcatgtggcgctaaaaatgaaatttttcgagcacaagccttttgagcagaaagcagtgatgg |
404 |
Q |
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| T |
43093473 |
ttgacaagttggcatcttcttgttacattttgttctcttcatgtggcactaaaaatgaaatttttcgagcacaagccttttgagcagaaagcagtgatgg |
43093374 |
T |
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| Q |
405 |
gatttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattctatcagg |
482 |
Q |
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| T |
43093373 |
gatttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattctatcagg |
43093296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 291 - 477
Target Start/End: Complemental strand, 43085534 - 43085348
Alignment:
| Q |
291 |
atgcagctacaacattgacaagttggcatcttcttgttacattttgttctcttcatgtggcgctaaaaatgaaatttttcgagcacaagccttttgagca |
390 |
Q |
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| T |
43085534 |
atgcagctacaactctgacaagctggcatctacttgtcacattttgttcccttcatttggcactcaaaatgagattcttcgagcacaaggcttttgagca |
43085435 |
T |
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| Q |
391 |
gaaagcagtgatgggatttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattcta |
477 |
Q |
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| T |
43085434 |
gaaagccgtagttggatttgggattttaaatggaatctcaattggacttttaaatttgagcctagggttcaattctgtcggcttcta |
43085348 |
T |
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