View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-19 (Length: 548)
Name: NF1457-2-Insertion-19
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Complemental strand, 41518973 - 41518439
Alignment:
| Q |
7 |
acaacactcacagtcctccctcaaaccaaccaatattttcttggaagaacaaaattgtgagtactcattatcaagccaaagcgaacaacttgaagtctaa |
106 |
Q |
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| T |
41518973 |
acaacactcacactcctccctcaaaccaaccaatattttctaggaagaacaaaattgtgagtactcattatcaagccaaagtgaacaacttgaagtctaa |
41518874 |
T |
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| Q |
107 |
acaattaattagtttcaataactcgattttggatctctcggtagatccaacgatcttgataacatgggtaagttttaagtgaaacaatcggctcatcttt |
206 |
Q |
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| T |
41518873 |
acaatta----gtttccataactcgattttggatctctcggtagatccaacgatcttgataacatgggtaagttttaagtgaaacaatcggctcatcttt |
41518778 |
T |
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| Q |
207 |
aaatttgttgtatctatacaaaataataaaatatcatcattgtagagttcttattattaacgcttattctaactttgatagttgatcccttctctaatta |
306 |
Q |
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| T |
41518777 |
aaatttgt---atctatacaaaataataaaatatcatcattgtagagttcttattattaacgcttattctaactttgatagttgatcccttctctaatta |
41518681 |
T |
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| Q |
307 |
attttgggattccttactgatcgaaaaatccaaataaatatgaacgaatcatcaaatgatgatcacctggaattttaatttgacagaacacctagaatta |
406 |
Q |
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| T |
41518680 |
attttgggattccttactgatcgaaaaatccaaataaatatgaacgaatcatcaaatgatgatcacctggaattttaatttgacagaacacctagaatta |
41518581 |
T |
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| Q |
407 |
ttctatatagctacacattagtcttttagccatctttatatacttcaacttgtttctaaattacaagttgtnnnnnnngaaagaaattaaaataggtaaa |
506 |
Q |
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| T |
41518580 |
ttctatatagctacacattagtcttttagccatctttatatacttcaacttgtttctaaattacaagttgtaaaaaaaaaaagaagttaaaataggtaaa |
41518481 |
T |
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| Q |
507 |
agaagcacaatgcatgtggtcctattcaacattccgtgtcta |
548 |
Q |
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| T |
41518480 |
agaagcacaatgcatgtggtcctattcaacattccgtgtcta |
41518439 |
T |
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