View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-2 (Length: 319)
Name: NF1457-2-Insertion-2
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 143 - 319
Target Start/End: Complemental strand, 27332968 - 27332792
Alignment:
| Q |
143 |
actaaatggaaaaattataactatgtgcaacacaaactcaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
242 |
Q |
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| T |
27332968 |
actaaatggaaaaattataactatgtgcaacacaaacacaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
27332869 |
T |
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| Q |
243 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgt |
319 |
Q |
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| T |
27332868 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgt |
27332792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 27333406 - 27333271
Alignment:
| Q |
8 |
tcatcttcttttgttacaaatgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttatatatgtaataatgtagcatttctag |
107 |
Q |
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| T |
27333406 |
tcatcttcttttgttacaaatgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttatatatgtaataatgtagcatttctag |
27333307 |
T |
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| Q |
108 |
atgaagtaaattaaagagagagataccaaatgttta |
143 |
Q |
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| T |
27333306 |
atgaagtaaattaaagagagagataccaaatgttta |
27333271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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