View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457-2-Insertion-21 (Length: 825)
Name: NF1457-2-Insertion-21
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-21 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 720
Target Start/End: Original strand, 25827990 - 25828704
Alignment:
| Q |
8 |
gtgcttccataaactccaaagcaaactagccatacaagcagccagttctggcatgaaaagttgtaacaatcaaaaagatcaattttgcttccaaactagt |
107 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||| ||||||||||||| ||||| ||||||| || |||||||||| ||||||||||||||||| | |
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| T |
25827990 |
gtgcttccgtaaactccgaaacaaactagccatacaagtagccagttctggcgtgaaacgttgtaaaaa-caaaaagatcgattttgcttccaaactact |
25828088 |
T |
|
| Q |
108 |
gtcactgacaatctgttgaatgtcgttccaaaggcaggtcaggatcgaaacttgcattgtaaatgggcaagtaaaaagcatgtgagccaaatcctaatca |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | || ||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
25828089 |
atcactgacaatctattgaatgtcgttccaaaggacagccataatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccatatcctaatca |
25828188 |
T |
|
| Q |
208 |
raagaaacacaactaacacactttatagggccttggacacctttatcccgtaaacgaactcgtgtaggcaaacaacctcaacacattctccaaactaagt |
307 |
Q |
| |
|
|||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||| |
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|
| T |
25828189 |
taagaaacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacacattcttcagactaagt |
25828288 |
T |
|
| Q |
308 |
gtttgattttcaggagaacctttaaccaccaaatctggctcagaaacctggccttcaatgatgcgatgtatccaccaaccattccatacaaagcctatat |
407 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
25828289 |
gtttgattttcaggagaacctctaaccgccatatccggctcagaaacctggtcttcaaagatgcgatgtatccaccaaaccttccatacaaagcctatat |
25828388 |
T |
|
| Q |
408 |
acacttttcgcataataatccccatccttttcagctttccaaatcaatttgtcatatgacacctaatcaaatatatcgcaaaatactaaaagcaata-tc |
506 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
25828389 |
acactttttacataatactcgccatccttttcagctttccaaatcaatttatcatctgacacctaatcaaatatatcgcaaaatactagaagcaatattc |
25828488 |
T |
|
| Q |
507 |
cggctaaaaacttgatgaatcaaatcatggttccataccttaagcataggaaccatcggactagcaacacaaaaattatgaacatggtatgtgtttggca |
606 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||| ||||||||| |
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|
| T |
25828489 |
gggctaaaaacatgatgaatcaaatcatggttccatacctttcgcgtaggaaccatcagactagcaacagaaaaattacaaacatggtatatgtttggca |
25828588 |
T |
|
| Q |
607 |
tattaccatcaatactgtcaccattaacaagccaa---gttcatcaagaatggaaataaaagtacttggccctatgctccatcaaacactcccttgaact |
703 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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|
| T |
25828589 |
tattaccatcaatacggtcaccatt-acaagccaaaaggttcatcaagaatggaaataaaagtacttggtcctatgcaccatcaaacacccccttgaact |
25828687 |
T |
|
| Q |
704 |
attcccatttgtttcgg |
720 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
25828688 |
attcccctttgtttcgg |
25828704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 25669518 - 25669885
Alignment:
| Q |
8 |
gtgcttccataaactccaaagcaaactagccatacaagcagccagttctggcatgaaaagttgtaacaatcaaaaagatcaattttgcttccaaactagt |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25669518 |
gtgcttccagaaactccaaagcaaactagccatacaagcatccagttctggcgtgaaacgttataacaa-caaaaagaccaattttgcttccaaactagt |
25669616 |
T |
|
| Q |
108 |
gtcactgacaatctgttgaatgtcgttccaaaggcaggtcaggatcgaaacttgcattgtaaatgggcaagtaaaaagcatgtgagccaaatcctaatca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
25669617 |
gtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccaaatcctaatca |
25669716 |
T |
|
| Q |
208 |
raagaaacacaactaacacactttatagggccttggacacctttatcccgtaaacgaactcgtgtaggcaaacaacctcaacacattctccaaactaagt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||| || |||||||| |
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|
| T |
25669717 |
gaagaaacacaactaacacactttatagggccttggacacctttatcctgtaaacgaactcgtgtaggcaaacgatctcgacacattccccgaactaagt |
25669816 |
T |
|
| Q |
308 |
gtttgattttcaggagaacctttaaccaccaaatctggctcagaaacctggccttcaatgatgcgatgt |
376 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||| |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
25669817 |
gtttgattttcgggagaacttttaaccgccaaatccggctcataaacctgaccttcaatgatgtgatgt |
25669885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 25472227 - 25472515
Alignment:
| Q |
8 |
gtgcttccataaactccaaagcaaactagccatacaagcagccagttctggcatgaaaagttgtaacaatcaaaaagatcaattttgcttccaaactagt |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| | |||||||||| |||||||||| |
|
|
| T |
25472227 |
gtgcttcgataaactccaaagcaaactagccatacaagtagccagttctggtgtgaaacattgtaatta-caaaaagatcg---------ccaaactagt |
25472316 |
T |
|
| Q |
108 |
gtcactgacaatctgttgaatgtcgttccaaaggcaggtcaggatcgaaacttgcattgtaaatgggcaagtaaaaagcatgtgagccaaatcctaatca |
207 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| | ||| | | ||||||||| ||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
25472317 |
gtcattgacaatctattgaatgttgttccaaaggccagccagaacc-aaacttgcaatgtaaatgggcaagtaaaagacaagtgagccaaatcctaatta |
25472415 |
T |
|
| Q |
208 |
raagaaacacaactaacacactttatagggccttggacacctttatcccgtaaacgaactcgtgtaggcaaacaacctcaacacattctccaaactaagt |
307 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
25472416 |
gaagaaacacaactaacacac----tagggcattagacacctttatcctgtaaacgaactcgtgtaggcaaacaaccaagacacattcttcagactaagt |
25472511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 52 - 295
Target Start/End: Original strand, 25429565 - 25429807
Alignment:
| Q |
52 |
gttctggcatgaaaagttgtaacaatcaaaaagatcaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggcaggtcagga |
151 |
Q |
| |
|
|||||| | ||||| |||||||||| |||||||||| || || | ||||||||||||| ||||| ||||||||||||||||||||| | | | | |
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|
| T |
25429565 |
gttctgccgtgaaacgttgtaacaa-caaaaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaa |
25429663 |
T |
|
| Q |
152 |
tcgaaacttgcattgtaaatgggcaagtaaaaagcatgtgagccaaatcctaatcaraagaaacacaactaacacactttatagggccttggacaccttt |
251 |
Q |
| |
|
|| ||||||| |||| |||||| |||||||| || |||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
25429664 |
tccaaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggcattggacaccttt |
25429763 |
T |
|
| Q |
252 |
atcccgtaaacgaactcgtgtaggcaaacaacctcaacacattc |
295 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
25429764 |
atcctctaaacgaacttttgtaggcaaacaacctcagcacattc |
25429807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 99 - 295
Target Start/End: Complemental strand, 24889301 - 24889105
Alignment:
| Q |
99 |
caaactagtgtcactgacaatctgttgaatgtcgttccaaaggcaggtcaggatcgaaacttgcattgtaaatgggcaagtaaaaagcatgtgagccaaa |
198 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| | | | ||| ||||||| |||| |||||| |||||||| || |||||||||| |
|
|
| T |
24889301 |
caaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatccaaacttggattgcaaatggcgaagtaaaagacacgtgagccaaa |
24889202 |
T |
|
| Q |
199 |
tcctaatcaraagaaacacaactaacacactttatagggccttggacacctttatcccgtaaacgaactcgtgtaggcaaacaacctcaacacattc |
295 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24889201 |
tcttaatcagaagaaacacaactaacacactttgtagggtattggacacctttatcctctaaacgaacttttgtaggcaaacaacctcgacacattc |
24889105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 415
Target Start/End: Complemental strand, 24888411 - 24888309
Alignment:
| Q |
313 |
attttcaggagaacctttaaccaccaaatctggctcagaaacctggccttcaatgatgcgatgtatccaccaaccattccatacaaagcctatatacact |
412 |
Q |
| |
|
|||||| ||| ||||||||||| | ||||| || ||||||||||| ||| | |||||||||||||||| | | |||||||||||||||||| ||||| |
|
|
| T |
24888411 |
attttcgggaaaacctttaaccgctaaatccagcccagaaacctggtctttgaaaatgcgatgtatccaccgaaccttccatacaaagcctatagacact |
24888312 |
T |
|
| Q |
413 |
ttt |
415 |
Q |
| |
|
||| |
|
|
| T |
24888311 |
ttt |
24888309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 25430563 - 25430610
Alignment:
| Q |
368 |
atgcgatgtatccaccaaccattccatacaaagcctatatacactttt |
415 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||| |||||||||||| |
|
|
| T |
25430563 |
atgcgatgtatccaccgaaccttccatacaaagcccatatacactttt |
25430610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 25430617 - 25430656
Alignment:
| Q |
450 |
atcaatttgtcatatgacacctaatcaaatatatcgcaaa |
489 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
25430617 |
atcaatttgtcatctgacacctaatcaaacatatcgcaaa |
25430656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 41837475 - 41837343
Alignment:
| Q |
162 |
cattgtaaatgggcaagtaaaaagcatgtgagccaaatcctaatcaraagaaacacaactaacacactttatagggccttggacacctttatcccgtaaa |
261 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||| ||| |||| ||| ||||| ||||||||||||| ||| |||||| ||| | || |||| | |||| |
|
|
| T |
41837475 |
cattgcaaatgggcaagtaaaaaacatgcgagtcaagtcctcatcgaaagaatcacaactaacacaatttgtagggcattgaaaacatttaccttgtaag |
41837376 |
T |
|
| Q |
262 |
cgaactcgtgtaggcaaacaacctcaacacatt |
294 |
Q |
| |
|
|| ||| | || ||||||||||||| ||||||| |
|
|
| T |
41837375 |
cgtacttgcgtgggcaaacaacctcgacacatt |
41837343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 38911773 - 38911824
Alignment:
| Q |
244 |
acacctttatcccgtaaacgaactcgtgtaggcaaacaacctcaacacattc |
295 |
Q |
| |
|
|||||||||||| ||||||||| | | |||||| |||||||||||||||||| |
|
|
| T |
38911773 |
acacctttatcctgtaaacgaatttgcgtaggccaacaacctcaacacattc |
38911824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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