View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457-2-Insertion-23 (Length: 930)

Name: NF1457-2-Insertion-23
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457-2-Insertion-23
NF1457-2-Insertion-23
[»] chr3 (1 HSPs)
chr3 (8-930)||(49124226-49125149)
[»] chr6 (4 HSPs)
chr6 (531-743)||(11683284-11683489)
chr6 (336-460)||(11683514-11683638)
chr6 (617-745)||(18988479-18988604)
chr6 (784-826)||(11683224-11683266)
[»] chr8 (1 HSPs)
chr8 (617-745)||(30341157-30341286)
[»] chr5 (1 HSPs)
chr5 (617-745)||(23916920-23917045)
[»] chr4 (3 HSPs)
chr4 (339-496)||(4270779-4270936)
chr4 (614-696)||(4271269-4271351)
chr4 (98-237)||(4270518-4270657)
[»] chr1 (3 HSPs)
chr1 (339-496)||(2807123-2807280)
chr1 (614-696)||(2807613-2807695)
chr1 (98-237)||(2806862-2807001)


Alignment Details
Target: chr3 (Bit Score: 728; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 8 - 930
Target Start/End: Complemental strand, 49125149 - 49124226
Alignment:
Q  8 gtactctacactgttccattgctggtttttaagaaacttaaaacattctgttttgattgttctgtttctgaataccaagatgcagaaaaggggtgtgttc 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49125149 gtactctacgctgttccattgctggtttttaagaaacttaaaacattctgttttgattgttctgtttctgaataccaagatgcagaaaaggggtgtgttc 49125050  T
Q  108 caataattgattacaaggaaatagaaaaatcgaccaacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttacaaggcacaatt 207  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49125049 caataattgattacaagcaaatagaaaaatcgaccgacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttacaaggcacaatt 49124950  T
Q  208 tgatgataatttggatgttgctgtcaagaaactacactgccaaacacaaaatgctgagacagaatttgaggtaaccattcatttgttgtttcttttcttc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49124949 tgatgataatttggatgttgctgtcaagaaactacactgccaaacacaaaatgctgagacagaatttgaggtaaccattcattttttgtttcttttcttc 49124850  T
Q  308 nnnnnnngtatttatatcttatattgaatttaatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttct 407  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124849 aaaaaaagtatttatatcttatattgaatttaatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttct 49124750  T
Q  408 ttgcttggttgtagcattaatggagacatgagatttattgtgtatgagttaatgcaaaatggatccttggaagctctattacatggtaatgttttgtatt 507  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124749 ttgctcggttgtagcattaatggagacatgagatttattgtgtatgagttaatgcaaaatggatccttggaagctctattacatggtaatgttttgtatt 49124650  T
Q  508 tgatgctaatt----tatatatatatggtagaagacttttacaactctcagttacataacattctaaactcagttacannnnnnnnnnnnnnnnnngcaa 603  Q
    |||||||||||    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||    
T  49124649 tgatgctaatttttatatatatacatggtagaagacttttacaactctcagttacataacattctaaactcagttaca---tttttctttttttgtgcaa 49124553  T
Q  604 aattttatgttgaaggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatc 703  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124552 aattttatgttgaaggaccatctcatggctcaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatc 49124453  T
Q  704 tctcttcaacatctcaaatctctccccacttttgtactttcaactaaggaaaatctaaactttcttgggaatgtagttatggctttttcaatcacaacat 803  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  49124452 tctcttcaacatctcaaatctct-cccacttttgtactttcaactaaagaaaatctaaactttctt-ggaatgtagttaaggctttttcaatcacaacat 49124355  T
Q  804 taaccaagtatacaaaattc-aaattaccactgttaacaaattaatgaacatttccgattggagaagttatagatccatttcattctgcatcttaaggtt 902  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||   |    
T  49124354 taaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagt 49124255  T
Q  903 ttggtcccctt-accaagtttattatgaa 930  Q
    || |||||||| || ||||||||||||||    
T  49124254 tttgtccccttaacaaagtttattatgaa 49124226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 531 - 743
Target Start/End: Complemental strand, 11683489 - 11683284
Alignment:
Q  531 gtagaagacttttacaactctcagttacataacattctaaactcagttacannnnnnnnnnnnnnnnnngcaaaattttatgttgaaggaccatctcatg 630  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||                  ||||||||||| |||||||||  ||||||||    
T  11683489 gtagaagacatttacaactctcagttaaataacattctaaactcagttacatttttcttgt--------gcaaaattttacgttgaaggaaaatctcatg 11683398  T
Q  631 gcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatctctc-cc 729  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11683397 gctcaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatctctctcc 11683298  T
Q  730 cacttttgtacttt 743  Q
    ||||||||||||||    
T  11683297 cacttttgtacttt 11683284  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 11683638 - 11683514
Alignment:
Q  336 tttaatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttgcttggttgtagcattaatggagaca 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  11683638 tttaatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttactcggttgtagcattaatggagaca 11683539  T
Q  436 tgagatttattgtgtatgagttaat 460  Q
    |||||||||||||||||||||||||    
T  11683538 tgagatttattgtgtatgagttaat 11683514  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 617 - 745
Target Start/End: Complemental strand, 18988604 - 18988479
Alignment:
Q  617 aggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatc 716  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    ||||||||||| |||||||||||||    
T  18988604 aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaa----cttaagagaatttctcttcaacatc 18988509  T
Q  717 tcaaatctctc-cccacttttgtactttca 745  Q
    ||||| ||||| | ||||||||||||||||    
T  18988508 tcaaacctctctcgcacttttgtactttca 18988479  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 826
Target Start/End: Complemental strand, 11683266 - 11683224
Alignment:
Q  784 ggctttttcaatcacaacattaaccaagtatacaaaattcaaa 826  Q
    |||| ||||||||||||| |||||| |||||||||||||||||    
T  11683266 ggctatttcaatcacaactttaacctagtatacaaaattcaaa 11683224  T

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Target: chr8 (Bit Score: 98; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 617 - 745
Target Start/End: Original strand, 30341157 - 30341286
Alignment:
Q  617 aggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatc 716  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30341157 aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaacttccttaagagaatctctcttcaacatc 30341256  T
Q  717 tcaaatctctc-cccacttttgtactttca 745  Q
    ||||| ||||| ||||||||||| ||||||    
T  30341257 tcaaacctctctcccacttttgtgctttca 30341286  T

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Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 617 - 745
Target Start/End: Original strand, 23916920 - 23917045
Alignment:
Q  617 aggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatc 716  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    ||||||||||| |||||||||||||    
T  23916920 aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaa----cttaagagaatttctcttcaacatc 23917015  T
Q  717 tcaaatctctc-cccacttttgtactttca 745  Q
    ||||| ||||| | ||||||||||||||||    
T  23917016 tcaaacctctctcgcacttttgtactttca 23917045  T

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Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 339 - 496
Target Start/End: Original strand, 4270779 - 4270936
Alignment:
Q  339 aatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttgcttggttgtagcattaatggagacatga 438  Q
    |||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||||||| | || || ||||||| |||||  ||    |    
T  4270779 aatagttggatgaatttccagaatgaggtggatttgttaagtaaaattcaacatccaaatgtaatttctctactgggctgtagcagtaatgaggattcaa 4270878  T
Q  439 gatttattgtgtatgagttaatgcaaaatggatccttggaagctctattacatggtaa 496  Q
    | |||||||| |||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  4270879 ggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaa 4270936  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 614 - 696
Target Start/End: Original strand, 4271269 - 4271351
Alignment:
Q  614 tgaaggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaa 696  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||    
T  4271269 tgaaggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgaccttctttaa 4271351  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 4270518 - 4270657
Alignment:
Q  98 gggtgtgttccaataattgattacaaggaaatagaaaaatcgaccaacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttaca 197  Q
    |||||||||||||| ||||| || ||| || |||||||| | ||    |||||  |||||||||||||| | ||||  ||||||||||||||||||||||    
T  4270518 gggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttaca 4270617  T
Q  198 aggcacaatttgatgataatttggatgttgctgtcaagaa 237  Q
    ||||    || ||||||||||| ||||||||  |||||||    
T  4270618 aggctaggttggatgataatttagatgttgccatcaagaa 4270657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 339 - 496
Target Start/End: Original strand, 2807123 - 2807280
Alignment:
Q  339 aatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttgcttggttgtagcattaatggagacatga 438  Q
    |||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||||||| | || || ||||||| |||||  ||    |    
T  2807123 aatagttggatgaatttacagaatgaggtggatttgttaagtaaaattcaacatccaaatgtaatttctctactgggctgtagcagtaatgaggattcaa 2807222  T
Q  439 gatttattgtgtatgagttaatgcaaaatggatccttggaagctctattacatggtaa 496  Q
    | |||||||| |||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  2807223 ggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaa 2807280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 614 - 696
Target Start/End: Original strand, 2807613 - 2807695
Alignment:
Q  614 tgaaggaccatctcatggcttaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaa 696  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||    
T  2807613 tgaaggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgaccttctttaa 2807695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 2806862 - 2807001
Alignment:
Q  98 gggtgtgttccaataattgattacaaggaaatagaaaaatcgaccaacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttaca 197  Q
    |||||||||||||| ||||| || ||| || |||||||| | ||    |||||  |||||||||||||| | ||||  ||||||||||||||||||||||    
T  2806862 gggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttaca 2806961  T
Q  198 aggcacaatttgatgataatttggatgttgctgtcaagaa 237  Q
    ||||    || ||||||||||| ||||||||  |||||||    
T  2806962 aggctaggttggatgataatttagatgttgccatcaagaa 2807001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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