View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-25 (Length: 512)
Name: NF1457-2-Insertion-25
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-25 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 47705319 - 47704843
Alignment:
| Q |
8 |
aaactcatgggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtga |
107 |
Q |
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| T |
47705319 |
aaactcatgggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtga |
47705220 |
T |
|
| Q |
108 |
ttgtttcggataactatcaattaccctttagtgatgttcttgattggagcaaattttcattgcatattccatcaaagaggataagtgaaatcaagacaat |
207 |
Q |
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| T |
47705219 |
ttgtttcggataactatcaattaccctttagtgatgttcttgattggagcaaattttcattgcatattccatcaaagaggataagtgaaatcaagacaat |
47705120 |
T |
|
| Q |
208 |
attgaaaagtgttccacatgccagatacytgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgat |
307 |
Q |
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| T |
47705119 |
attaaaaagtgttccacatgccagatacttgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgat |
47705020 |
T |
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| Q |
308 |
gtgtttcatatgattcttcattcaatrtggcttagaagacttaatattaggctacccctttgatatttggtaatttcatctgtactaatttatgtgttgt |
407 |
Q |
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| T |
47705019 |
gtgtttcatatgattcttcattcaatatggcttagaagacttaatattaggctacccctttgatatttggtaatttcatctgtactaatttatgtgttgt |
47704920 |
T |
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| Q |
408 |
aaagagtatttcattaactgaaaatattccgtgttgattaacgctattttatttatgatgaaaaatttagtgtagcta |
485 |
Q |
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| T |
47704919 |
aaagagtatttcattaactgaaaatattccgtgttgattaa-gctattttatttaagatgaaaaatttagtgtagcta |
47704843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 47727811 - 47727696
Alignment:
| Q |
237 |
tgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgatgtgtttcatatgattcttcattcaatrtg |
336 |
Q |
| |
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|||| ||||||| || ||| |||||||||||| |||||||| ||||| || ||||| || ||||||||| | || ||||| ||||||||||| || |
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| T |
47727811 |
tgaagttgcatatgaatgtgatgaaagttcaaaagcattttgttatgaataggcctgctaagccttttgatgtgatgcacatgatacttcattcaatttg |
47727712 |
T |
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| Q |
337 |
gcttagaagacttaat |
352 |
Q |
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| T |
47727711 |
gcttagaagacttaat |
47727696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41765955 - 41766000
Alignment:
| Q |
301 |
atttgatgtgtttcatatgattcttcattcaatrtggcttagaaga |
346 |
Q |
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| T |
41765955 |
atttgatgtgtttcatatgatccttcattctatatggcttagaaga |
41766000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41757872 - 41757917
Alignment:
| Q |
301 |
atttgatgtgtttcatatgattcttcattcaatrtggcttagaaga |
346 |
Q |
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| T |
41757872 |
atttgatgtatttcatatgatccttcattctatatggcttagaaga |
41757917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 44629169 - 44629206
Alignment:
| Q |
23 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
60 |
Q |
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| T |
44629169 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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