View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457-2-Insertion-26 (Length: 542)

Name: NF1457-2-Insertion-26
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457-2-Insertion-26
NF1457-2-Insertion-26
[»] chr4 (11 HSPs)
chr4 (9-530)||(42901579-42902099)
chr4 (143-357)||(46528908-46529130)
chr4 (239-362)||(11290159-11290293)
chr4 (247-362)||(33912041-33912167)
chr4 (136-310)||(52810661-52810842)
chr4 (247-314)||(37097763-37097837)
chr4 (239-310)||(50868049-50868127)
chr4 (250-315)||(2016533-2016605)
chr4 (247-282)||(21644493-21644528)
chr4 (248-282)||(4026072-4026106)
chr4 (365-413)||(30978714-30978762)
[»] chr7 (22 HSPs)
chr7 (138-355)||(36495782-36496006)
chr7 (138-355)||(47346081-47346311)
chr7 (138-310)||(37755974-37756153)
chr7 (239-362)||(33909127-33909261)
chr7 (138-355)||(36270457-36270685)
chr7 (239-362)||(47346303-47346437)
chr7 (243-362)||(36270677-36270807)
chr7 (239-362)||(36495656-36495790)
chr7 (243-356)||(34748772-34748896)
chr7 (201-279)||(24240252-24240329)
chr7 (239-362)||(37756145-37756278)
chr7 (138-310)||(19843599-19843775)
chr7 (239-310)||(37761948-37762026)
chr7 (247-314)||(39550010-39550084)
chr7 (247-355)||(27585254-27585373)
chr7 (243-355)||(34914907-34915030)
chr7 (239-279)||(24240464-24240504)
chr7 (211-275)||(44314382-44314445)
chr7 (138-191)||(33909253-33909306)
chr7 (414-459)||(19620040-19620085)
chr7 (283-311)||(5775923-5775951)
chr7 (414-458)||(18926375-18926419)
[»] chr3 (16 HSPs)
chr3 (138-349)||(10450417-10450636)
chr3 (138-349)||(40769905-40770123)
chr3 (138-310)||(48511446-48511627)
chr3 (220-362)||(10450628-10450780)
chr3 (239-362)||(48511619-48511753)
chr3 (225-314)||(53966210-53966305)
chr3 (243-310)||(11244577-11244651)
chr3 (138-356)||(9180257-9180486)
chr3 (138-202)||(16051456-16051523)
chr3 (243-310)||(15820641-15820715)
chr3 (251-310)||(43101407-43101473)
chr3 (251-311)||(54369041-54369108)
chr3 (239-279)||(42190550-42190590)
chr3 (138-231)||(16060778-16060873)
chr3 (247-281)||(48837080-48837114)
chr3 (138-233)||(22666435-22666532)
[»] chr2 (18 HSPs)
chr2 (138-355)||(11349780-11350005)
chr2 (142-355)||(11350174-11350395)
chr2 (138-310)||(10861870-10862046)
chr2 (250-362)||(28193555-28193678)
chr2 (201-356)||(15961786-15961951)
chr2 (239-362)||(15962137-15962271)
chr2 (239-362)||(936802-936936)
chr2 (138-281)||(15962000-15962145)
chr2 (250-362)||(10862038-10862161)
chr2 (239-355)||(39420687-39420814)
chr2 (137-281)||(10862194-10862338)
chr2 (250-310)||(33532772-33532839)
chr2 (243-355)||(32810863-32810986)
chr2 (138-202)||(28193499-28193563)
chr2 (247-282)||(4506111-4506146)
chr2 (414-459)||(13538444-13538489)
chr2 (414-459)||(33455016-33455061)
chr2 (250-282)||(17324092-17324124)
[»] chr5 (16 HSPs)
chr5 (138-267)||(946780-946908)
chr5 (139-282)||(33040362-33040503)
chr5 (138-282)||(83881-84022)
chr5 (239-356)||(32395300-32395428)
chr5 (138-232)||(30329952-30330046)
chr5 (160-282)||(33040198-33040318)
chr5 (239-362)||(30329826-30329960)
chr5 (138-349)||(22196319-22196541)
chr5 (226-355)||(29396330-29396469)
chr5 (243-362)||(84014-84144)
chr5 (174-282)||(18541878-18541983)
chr5 (250-310)||(19439861-19439928)
chr5 (243-281)||(5095968-5096006)
chr5 (239-267)||(946733-946761)
chr5 (365-401)||(16161411-16161447)
chr5 (251-279)||(17016167-17016195)
[»] chr1 (18 HSPs)
chr1 (138-356)||(29228564-29228793)
chr1 (216-358)||(17294946-17295098)
chr1 (152-282)||(17294773-17294900)
chr1 (138-282)||(45858771-45858912)
chr1 (239-362)||(29228438-29228572)
chr1 (211-279)||(4187356-4187423)
chr1 (138-279)||(30604534-30604675)
chr1 (250-362)||(45858656-45858779)
chr1 (247-355)||(12287846-12287965)
chr1 (243-355)||(33562114-33562237)
chr1 (211-282)||(31411429-31411499)
chr1 (243-282)||(31411631-31411670)
chr1 (225-310)||(51722230-51722322)
chr1 (239-349)||(4187507-4187627)
chr1 (247-307)||(45443218-45443285)
chr1 (247-310)||(18585036-18585106)
chr1 (157-189)||(31411505-31411537)
chr1 (414-458)||(48947252-48947296)
[»] chr6 (8 HSPs)
chr6 (243-362)||(26842714-26842844)
chr6 (138-239)||(16193912-16194012)
chr6 (246-314)||(33396304-33396379)
chr6 (138-224)||(25184119-25184203)
chr6 (243-355)||(25184204-25184327)
chr6 (211-281)||(33396489-33396557)
chr6 (331-362)||(16193889-16193920)
chr6 (283-311)||(15102660-15102688)
[»] chr8 (9 HSPs)
chr8 (138-362)||(17607194-17607425)
chr8 (138-282)||(38287808-38287952)
chr8 (140-314)||(8605381-8605562)
chr8 (243-310)||(18464064-18464138)
chr8 (247-362)||(35908676-35908802)
chr8 (243-310)||(14019802-14019876)
chr8 (247-310)||(15711494-15711564)
chr8 (211-275)||(20232475-20232538)
chr8 (217-310)||(9596029-9596127)
[»] scaffold0012 (1 HSPs)
scaffold0012 (155-310)||(165693-165852)
[»] scaffold0785 (1 HSPs)
scaffold0785 (138-266)||(2983-3108)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 42901579 - 42902099
Alignment:
Q  9 ataataatgataagggtcttgttaactagttatgctgaatttccaaggatgaaagagcatagagaaccatttgttgaatcatttcataccgtgaagtgtc 108  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||     
T  42901579 ataataataataagggtcttgttaacgagttatgctgaattcccaaggatgaa-gagcatagagaaccatttgttgaatcatttcagaccgtgaagtgtt 42901677  T
Q  109 accattgactgcactactaatggaagatgcatggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccgga 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42901678 accattgactacactactaatggaagatgcatggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggg 42901777  T
Q  209 cagaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattcgagtttataaagaggaggcactcctc 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42901778 cagaagcgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattcgagtttataaagaggaggcactcctc 42901877  T
Q  309 actgtatcagttttgtgtggatgagttagacctcgatattcsttacatggtatccagggcactctttaagcattccaatttaggagattatttattaaga 408  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| |||||||||||| |    
T  42901878 actgtattagttttgtatggatgagttagacctcgatattcgttacatgatatccgggacactctttaagcattccaatttaggaaattatttattaaaa 42901977  T
Q  409 aagtctcaatttccaaagcatagattacacaacttttcataaaaagttactgtagaaaaatgttggggcgttacaccgatcaagtcaaggtatgttttat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42901978 aagtctcaatttccaaagcatagattacacaacttttcataaaaagttactgtagaaaaattttggggcgttacaccgatcaagtcaaggtatgttttat 42902077  T
Q  509 atgtaacgagcaaatgatagac 530  Q
    |||||| |||||||||||||||    
T  42902078 atgtaaggagcaaatgatagac 42902099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 143 - 357
Target Start/End: Complemental strand, 46529130 - 46528908
Alignment:
Q  143 tatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaact 242  Q
    |||||| | |||| |||||||||||||||||||||||||||| |||||||| || ||||| |||| | |||| | |||||||||||||||| ||| |||     
T  46529130 tatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccattggg-ccgggctgaagcgcgagggggtgtgttagcagcc-aaca 46529033  T
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    ||| |||||||||||||| |||||| ||||||| ||||||       |||||||||||||||||||||||||||| |||     | ||||||| ||||||    
T  46529032 ctc-ggtgggatttagtctcacatcggatagattggattcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttttgtatggatg 46528934  T
Q  332 agttagacctcgatattcsttacatg 357  Q
    |||||| ||||||||||| | |||||    
T  46528933 agttaggcctcgatattcgtgacatg 46528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 11290159 - 11290293
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       |||||||||||||||||||| ||||||| |||     | ||||||| ||    
T  11290159 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcattcctcaccgtacaagccggttttgtatg 11290258  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| |||| |||||| | ||||||||||    
T  11290259 gatgagttaggcctcaatattcgtaacatggtatc 11290293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 33912041 - 33912167
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtat----cagttttgtgtggatgagtt 335  Q
    ||||||||||||||||||||| | |||||||||| |       |||||||||||||||||||||||||||||||||    | |||||||  |||||||||    
T  33912041 ggtgggatttagtcccacatcgggtagataggatacttgagaagagtttataaagaggaggcactcctcactgtataagccggttttgtaaggatgagtt 33912140  T
Q  336 agacctcgatattcsttacatggtatc 362  Q
    || ||||||||||  ||||||||||||    
T  33912141 aggcctcgatatttgttacatggtatc 33912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 52810842 - 52810661
Alignment:
Q  136 tgcatggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttag 232  Q
    ||||||||||||| | |||| ||||||||||||||||||    ||||||||| |||||||| || ||||| |||| | |||| |||||||||||||||||    
T  52810842 tgcatggtatcagagcctatcgggtccatcgttgggcttccgacatcgtccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgttag 52810744  T
Q  233 ctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    | ||| ||| |||   ||| ||||||||| ||||| |||||||| |||||       ||||||||||||||||| ||||||||||    
T  52810743 cggcc-aacactc-aatggaatttagtcctacatcggatagataagattcttgagaagagtttataaagaggagacactcctcac 52810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 37097837 - 37097763
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta 314  Q
    ||||||||||||||||||||||||||||||||||||       || |||||||||||||| ||||||||||||||    
T  37097837 ggtgggatttagtcccacatcagatagataggattcttgagaagattttataaagaggagacactcctcactgta 37097763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 50868127 - 50868049
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       |||||||||||||||||||| |||||||    
T  50868127 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcattcctcac 50868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 2016533 - 2016605
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtat 315  Q
    ||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||| ||||    
T  2016533 gggatttagtctcacatcagatagataggattcttgagaagagtttataaagaggaggcactcctcaccgtat 2016605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 21644493 - 21644528
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc 282  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21644493 ggtgggatttaatcccacatcagatagataggattc 21644528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 4026072 - 4026106
Alignment:
Q  248 gtgggatttagtcccacatcagatagataggattc 282  Q
    |||||||||||||||||||| ||||||||||||||    
T  4026072 gtgggatttagtcccacatcggatagataggattc 4026106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 30978762 - 30978714
Alignment:
Q  365 gggcactctttaagcattccaatttaggagattatttattaagaaagtc 413  Q
    |||||||||||||||||||||| ||| || || ||||||||| ||||||    
T  30978762 gggcactctttaagcattccaaattaagaaatgatttattaaaaaagtc 30978714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 138 - 355
Target Start/End: Original strand, 36495782 - 36496006
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| || ||||| | || | |||| |||  ||||||||||||| |||    
T  36495782 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccatgcttcaggcccattgggccagg-ctgaagcgtg--ggggtgtgttagcggcc 36495878  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgt 326  Q
    || ||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||| |||     | |||||||      
T  36495879 aa-ctctcgggtgggatttagtcccacatcggatagataggattcttgagaatagtttataaagaggaggcactcctcaccgtacaagccggttttgtag 36495977  T
Q  327 ggatgagttagacctcgatattcsttaca 355  Q
    ||||||||||| |||| |||||| |||||    
T  36495978 ggatgagttaggcctctatattcgttaca 36496006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 355
Target Start/End: Complemental strand, 47346311 - 47346081
Alignment:
Q  138 catggtatcagggtctattgggtccat--cgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttag 232  Q
    ||||||||||| | |||| ||||||||  ||||||||||   ||||| |||| |||||||| || |||| ||||| | |||| |||||||||||||||||    
T  47346311 catggtatcagagcctatcgggtccatgtcgttgggcttcctgcatc-tccacgcttcaggcccattgg-accgggctgaagcgtgagggggtgtgttag 47346214  T
Q  233 ctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttt 321  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||| |||     | ||||    
T  47346213 cggccaa-ctctcgggtgggatttagtcccacatcagatagataggaatcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttt 47346115  T
Q  322 tgtgtggatgagttagacctcgatattcsttaca 355  Q
    |||  ||||||||||| ||||||||||| |||||    
T  47346114 tgtacggatgagttaggcctcgatattcgttaca 47346081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 37756153 - 37755974
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||||| | |||| ||||||||||||||||||   ||||| |||| |||||||| || ||||| |||| | |||| ||||||||||||||||||     
T  37756153 catggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgttagcg 37756056  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||       ||||||||||||||||||||||| ||||    
T  37756055 gccaa-ctctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcttcac 37755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 33909127 - 33909261
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||  ||||||||||||||     | ||||||| ||    
T  33909127 aactctcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggatacactcctcactgtacaagccggttttgtatg 33909226  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| ||||||||||| ||||||||||||    
T  33909227 gatgagttaggcctcgatattctttacatggtatc 33909261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 355
Target Start/End: Complemental strand, 36270685 - 36270457
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||||  | |||| ||||||||||||||||||   |||||||||| |||||||| || ||||| |||| | |||| ||||||| ||||||||||     
T  36270685 catggtatcaaagcctatcgggtccatcgttgggcttcaagcatcgtccacgcttcaggcccattggg-ccgggctgaagcgtgagggtgtgtgttagcg 36270587  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggatt-------cgagtttataaagaggaggcactcctcactgta----tcagttttg 323  Q
    | ||| | ||||| ||||||||||||||||||| |||||||||||||       |||||||||||||||||| |||||||||| |||     | | ||||    
T  36270586 gtcaa-cactcgg-tgggatttagtcccacatcggatagataggattcttgagacgagtttataaagaggagacactcctcaccgtacaagccggctttg 36270489  T
Q  324 tgtggatgagttagacctcgatattcsttaca 355  Q
    |  ||||||||||| ||||||||||| |||||    
T  36270488 taaggatgagttaggcctcgatattcgttaca 36270457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 47346437 - 47346303
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| || |||||||| ||       |||||||||||||||||||||||||||| |||     | |||||||  |    
T  47346437 aactctcgggtgggatttagtcccacatcggaaagataggaatcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttttgtacg 47346338  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| ||||||||||| ||||||||||||    
T  47346337 gatgagttaggcctcgatattcgttacatggtatc 47346303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 36270807 - 36270677
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    |||||||||||||| |||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||     | |||||||  |||||    
T  36270807 ctcgggtgggattttgtcccacattggatagataggattcttgacaggagtttataaagaggaggcactcctcactgtacaagccggttttgtaaggatg 36270708  T
Q  332 agttagacctcgatattcsttacatggtatc 362  Q
    |||||| ||||||||||  ||||||||||||    
T  36270707 agttaggcctcgatatttgttacatggtatc 36270677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 36495656 - 36495790
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||| |||     | |||||||  |    
T  36495656 aactctcgggtggcatttagtcccacatcggatagataggattcttgagaatagtttataaagaggaggcactcctcaccgtagaagccggttttgtagg 36495755  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| ||||||||||| || |||||||||    
T  36495756 gatgagttaggcctcgatattcgtttcatggtatc 36495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 34748772 - 34748896
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| ||||||| |||     | |||||||  |||||    
T  34748772 ctcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcattcctcaccgtacaagccggttttgtaaggatg 34748871  T
Q  332 agttagacctcgatattcsttacat 356  Q
    |||||||||||||||||| | ||||    
T  34748872 agttagacctcgatattcgtgacat 34748896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 24240329 - 24240252
Alignment:
Q  201 ggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagatagga 279  Q
    ||||||| | |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||    
T  24240329 ggaccgggctgaagcgtgagggggtgtgttagcagccaa-ctctcaggtgggatttagtcccacatcggatagatagga 24240252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 37756278 - 37756145
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgt---atcagttttgtgtgg 328  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||||||||||||||||| |||| ||   | | | ||| | |||    
T  37756278 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcttcaccgtacaagccggtttttatgg 37756179  T
Q  329 atgagttagacctcgatattcsttacatggtatc 362  Q
    ||||||||| ||||||||||| | ||||||||||    
T  37756178 atgagttaggcctcgatattcatgacatggtatc 37756145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 310
Target Start/End: Original strand, 19843599 - 19843775
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| |||||||||||  ||||||||||||||| |||||||  || || || |||| | |||| ||||| | |||||||||| |||    
T  19843599 catggtatcagagcctatcgggtccatcgtatggcttgcatcgtccacgcttcagacccattagg-ccgggctgaagcgtgagcgagtgtgttagcggcc 19843697  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
     ||| ||| |  |||||||||||||| ||||||||||||||||||       |||||||||||||| | |||||||||||    
T  19843698 -aacactc-gaagggatttagtcccaaatcagatagataggattcttgagaagagtttataaagagaaagcactcctcac 19843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 37762026 - 37761948
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||||||||||||||||| ||||    
T  37762026 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcttcac 37761948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 39550084 - 39550010
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta 314  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||| ||||||||    
T  39550084 ggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcatcactgta 39550010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 27585254 - 27585373
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatgagtt 335  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||| |||||||||||||||| |||     | |||||||  |||||||||    
T  27585254 ggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaaaaggaggcactcctcaccgtacaagccggttttgtaaggatgagtt 27585353  T
Q  336 agacctcgatattcsttaca 355  Q
    ||  |||||||||| |||||    
T  27585354 aggtctcgatattcgttaca 27585373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 355
Target Start/End: Complemental strand, 34915030 - 34914907
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    ||||||||||||||||||||||||| |||||| |||||||       ||||||| ||||| |||||||||||||| |||     | |||||||  |||||    
T  34915030 ctcgggtgggatttagtcccacatcggatagacaggattcttgagaagagtttacaaagatgaggcactcctcaccgtacaagccggttttgtagggatg 34914931  T
Q  332 agttagacctcgatattcsttaca 355  Q
    |||||| ||||||||||| |||||    
T  34914930 agttaggcctcgatattcgttaca 34914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 24240504 - 24240464
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagatagga 279  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24240504 aactctcgggtgggatttagtcccacatcggatagatagga 24240464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 44314445 - 44314382
Alignment:
Q  211 gaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagat 275  Q
    |||| ||||||| |||||||||| ||||| | ||||||||||||||||||||||||| |||||||    
T  44314445 gaagcgtgagggtgtgtgttagcggccaa-cactcgggtgggatttagtcccacatcggatagat 44314382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 33909253 - 33909306
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttca 191  Q
    ||||||||||| | ||||  ||||||||||||||||||||||||||| ||||||    
T  33909253 catggtatcagagcctatcaggtccatcgttgggcttgcatcgtccacgcttca 33909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 19620040 - 19620085
Alignment:
Q  414 tcaatttccaaagcatagattacacaacttttcataaaaagttact 459  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||||    
T  19620040 tcaatttccaatgcactgattatacaacttttcataaaaagttact 19620085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 5775923 - 5775951
Alignment:
Q  283 gagtttataaagaggaggcactcctcact 311  Q
    |||||||||||||||||||||||||||||    
T  5775923 gagtttataaagaggaggcactcctcact 5775951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 18926375 - 18926419
Alignment:
Q  414 tcaatttccaaagcatagattacacaacttttcataaaaagttac 458  Q
    ||||||| ||| |||| || |||||||||||||||||||||||||    
T  18926375 tcaattttcaatgcattgaatacacaacttttcataaaaagttac 18926419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 349
Target Start/End: Complemental strand, 10450636 - 10450417
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| || ||| | |||| | |||| |||||||||||||||||| |||    
T  10450636 catggtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattgtg-ccgggctgaagcgtgagggggtgtgttagcagcc 10450539  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatca----gttttgtgt 326  Q
     ||| ||||||||||||||||||||||||| |||||||||| |||       |||||||||| ||||||||||||||||| |||  |    ||||||||     
T  10450538 -aacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataacgaggaggcactcctcaccgtacaagctggttttgtgg 10450440  T
Q  327 ggatgagttagacctcgatattc 349  Q
    ||||||||||| |||||||||||    
T  10450439 ggatgagttaggcctcgatattc 10450417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 349
Target Start/End: Complemental strand, 40770123 - 40769905
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||| ||||| | || |  ||| |||||||||||||||||| |||    
T  40770123 catggtatcagagtctatcgggtccatcgttgggcttgcatc-tccacgcttcaggtccattggg-ctgggctaaagcgtgagggggtgtgttagcggcc 40770026  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggatt-------cgagtttataaagaggaggcactcctcactgta----tcagttttgtgt 326  Q
     ||| |||| | |||||||||||||||||| |||||||| ||||        ||||| ||||||||||| ||||||||||||||     | ||||||| |    
T  40770025 -aacactcgag-gggatttagtcccacatcggatagatatgattattgtgaagagttcataaagaggagacactcctcactgtacaagccggttttgtat 40769928  T
Q  327 ggatgagttagacctcgatattc 349  Q
    ||||||||||| |||| ||||||    
T  40769927 ggatgagttaggcctcaatattc 40769905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 48511627 - 48511446
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgt--tag 232  Q
    ||||||||||| | |||| ||||||||||||||||||   ||||| |||| |||||||| || ||||| |||| | |||| ||||||||||||||  |||    
T  48511627 catggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgtgttag 48511530  T
Q  233 ctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    | ||||| ||||||||||||||||||||||||||| ||||||||||| ||       |||||||||||||||||||| |||||||    
T  48511529 cggccaa-ctctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcattcctcac 48511446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 10450780 - 10450628
Alignment:
Q  220 gggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactg 312  Q
    ||||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||       |||||||||||||||||||||||||||| |    
T  10450780 gggggggtgttagcagccaa-cactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcaccg 10450682  T
Q  313 ta----tcagttttgtgtggatgagttagacctcgatattcsttacatggtatc 362  Q
    ||     | |||||||| ||||||||||| ||||||||||| | ||||||||||    
T  10450681 tacaagccggttttgtggggatgagttaggcctcgatattcgtaacatggtatc 10450628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 48511753 - 48511619
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       |||||||||||||||||||||||||||| |||     | ||||||| ||    
T  48511753 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttttgtatg 48511654  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| |||| |||||| | ||||||||||    
T  48511653 gatgagttaggcctcaatattcgtgacatggtatc 48511619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 53966210 - 53966305
Alignment:
Q  225 tgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta 314  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||| ||||    
T  53966210 tgtgttagcggccaa-ctctcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctcattgta 53966305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 11244651 - 11244577
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||    
T  11244651 ctcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcac 11244577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 356
Target Start/End: Original strand, 9180257 - 9180486
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||||| | |||| ||||||||||||||||||   |||||||||| | | |||| || ||||| | || | |||| ||||| ||||||||||||     
T  9180257 catggtatcagagcctatcgggtccatcgttgggcttccagcatcgtccacgatccaggcccattggg-ctgggctgaagcgtgagtgggtgtgttagcg 9180355  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatca----gttttg 323  Q
    ||||| | ||||  | ||||||||||||||||| ||||||||||||||        |||||||||||||||| |||||||||| |||  |    ||||||    
T  9180356 gccaacc-ctcga-tcggatttagtcccacatcggatagataggattcttgagaaaagtttataaagaggagacactcctcaccgtacaagctggttttg 9180453  T
Q  324 tgtggatgagttagacctcgatattcsttacat 356  Q
    |  |||| |||||| ||||||||||| ||||||    
T  9180454 taaggatcagttaggcctcgatattcattacat 9180486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 16051523 - 16051456
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttggg 202  Q
    ||||||||||| | ||||||||||||||||||||||   |||||||||||||||||||| || |||||    
T  16051523 catggtatcagagcctattgggtccatcgttgggcttcctgcatcgtccatgcttcaggcccattggg 16051456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 15820715 - 15820641
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||| ||||||||||||||       |||||||||| |||||| ||||||||||    
T  15820715 ctcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataacgaggagacactcctcac 15820641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 43101473 - 43101407
Alignment:
Q  251 ggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||    
T  43101473 ggatttagtcccacatcagatagataggactcttgagaagagtttataaagaggaggcactcctcac 43101407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 54369041 - 54369108
Alignment:
Q  251 ggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcact 311  Q
    ||||||||||||||||| ||||||||||| ||       |||||||||||||||||||||||||||||    
T  54369041 ggatttagtcccacatcggatagataggactcttgagaagagtttataaagaggaggcactcctcact 54369108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 42190590 - 42190550
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagatagga 279  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  42190590 aactctcgggtgggatttaatcccacatcggatagatagga 42190550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 16060873 - 16060778
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttggg---cttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtta 231  Q
    ||||||||||| | |||||||||||||| |||||   ||||||||||||| |||||||| || ||||| |||  | |||  ||||||||||||||||    
T  16060873 catggtatcagagcctattgggtccatctttgggcttcttgcatcgtccacgcttcaggcccattggg-ccgtgctgaaacgtgagggggtgtgtta 16060778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 48837114 - 48837080
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggatt 281  Q
    ||||||||||||||||||||| |||||||||||||    
T  48837114 ggtgggatttagtcccacatcggatagataggatt 48837080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 22666532 - 22666435
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagc 233  Q
    |||||||||||   |||| ||||| ||||||||||||   |||||||||| | |||||| |||||||| |||| | |||| ||||||| ||||||||||    
T  22666532 catggtatcagaacctatcgggtctatcgttgggcttcctgcatcgtccacgtttcaggcccgttggg-ccgggctgaagcgtgagggtgtgtgttagc 22666435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 355
Target Start/End: Complemental strand, 11350005 - 11349780
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| || ||||| | || | |||| |||||||||||||||||| |||    
T  11350005 catggtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ctgggccgaagcgtgagggggtgtgttagcagcc 11349908  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgt 326  Q
     ||| ||||||||||||||||||||||||| |||||||||| |||       |||||||||||||||||||||||||||| |||     || |||||| |    
T  11349907 -aacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcaccgtaaaagccaattttgtat 11349809  T
Q  327 ggatgagttagacctcgatattcsttaca 355  Q
    |||||||||||  || ||||||| |||||    
T  11349808 ggatgagttaggtcttgatattcgttaca 11349780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 142 - 355
Target Start/End: Complemental strand, 11350395 - 11350174
Alignment:
Q  142 gtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaac 241  Q
    ||||||| | |||||||||||||||||||||||||||| |||| |||||||| || ||||| | || | |||| |||| |||| |||||||| ||| |||    
T  11350395 gtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ctgggctgaagcgtgacggggggtgttagcagcc-aac 11350299  T
Q  242 tctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggat 330  Q
     ||||||||||||||||||||| ||| |||||||||| |||       |||||||||||||||||||||||||||| |||     | ||||||| |||||    
T  11350298 actcgggtgggatttagtcccatatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcaccgtaaaagccggttttgtatggat 11350199  T
Q  331 gagttagacctcgatattcsttaca 355  Q
    |||||||  || ||||||| |||||    
T  11350198 gagttaggtcttgatattcgttaca 11350174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 10862046 - 10861870
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| || |||||  ||| | |||| |||||||||||||||||| |||    
T  10862046 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccattggg-tcgggctgaagcgtgagggggtgtgttagcggcc 10861948  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
     ||| |||| | |||||||||||||| ||  |||| |||||||||       ||||||||||||||||||||||||||||    
T  10861947 -aacactcgag-gggatttagtcccatattggatatataggattcttgagaagagtttataaagaggaggcactcctcac 10861870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 28193678 - 28193555
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatgagttaga 338  Q
    |||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||| |||    ||||||||||  ||||||||||||    
T  28193678 gggatttagtcccacatcagatagataggattcttgagaagattttataaagaggaggcactcctcaccgtacaagtcagttttgtaaggatgagttaga 28193579  T
Q  339 cctcgatattcsttacatggtatc 362  Q
    ||||||||||| | ||||||||||    
T  28193578 cctcgatattcgtgacatggtatc 28193555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 15961951 - 15961786
Alignment:
Q  201 ggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc--gag-----tttataaa 293  Q
    ||||||| | |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||  |||     ||||||||    
T  15961951 ggaccgggctgaagcgtgagggggtgtgttagcggccaa-ctctcgggtgggatttagtcccacatcggatagataggaatcttgagaatcttttataaa 15961853  T
Q  294 gaggaggcactcctcactgta----tcagttttgtgtggatgagttagacctcgatattcsttacat 356  Q
    ||||||||||||||||| |||     | |||||||  ||||||||||| |||| |||||| ||||||    
T  15961852 gaggaggcactcctcaccgtacaagccggttttgtagggatgagttaggcctcaatattcgttacat 15961786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 15962271 - 15962137
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||        ||||||||||||||||||||||||||| |||     | |||||||  |    
T  15962271 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaatagtttataaagaggaggcactcctcaccgtacaagccggttttgtagg 15962172  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| |||| |||||| ||||||||||||    
T  15962171 gatgagttaggcctctatattcgttacatggtatc 15962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 936802 - 936936
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||       ||||||||||||||||| |||||||||| |||     ||||||||| |     
T  936802 aactctcgggtgggatttagtctcacatcggatagataggaatcttgagaagagtttataaagaggagacactcctcaccgtacaagccagttttgtata 936901  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| ||||||||||| | ||||||||||    
T  936902 gatgagttaggcctcgatattcatgacatggtatc 936936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 281
Target Start/End: Complemental strand, 15962145 - 15962000
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttag-ct-- 234  Q
    ||||||||||| | |||| |||||||||||||||||| |||| |||| |||||||| || |||| ||||| | |||| ||||||||||||||||| ||      
T  15962145 catggtatcagagcctatcgggtccatcgttgggctt-catc-tccacgcttcaggcccattgg-accgggctgaagcgtgagggggtgtgttagactta 15962049  T
Q  235 --gccaaactctcgggtgggatttagtcccacatcagatagataggatt 281  Q
      | | ||||||||||||||||||||||||||||  |||||||||||||    
T  15962048 gcggccaactctcgggtgggatttagtcccacattggatagataggatt 15962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 10862161 - 10862038
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatcag----ttttgtgtggatgagttaga 338  Q
    |||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||| |||| |||  ||    ||||||  ||||||||||||    
T  10862161 gggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcatcaccgtacaagccggttttgtaaggatgagttaga 10862062  T
Q  339 cctcgatattcsttacatggtatc 362  Q
    |||| |||||| ||||||||||||    
T  10862061 cctccatattcgttacatggtatc 10862038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 39420687 - 39420814
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggatt-------cgagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| |        |||||||||||||||||||||||||||| |||     | |||||||  |    
T  39420687 aactctcgggtgggatttagtcccacatcggatagataggaattttgagaagagtttataaagaggaggcactcctcacagtacaagccggttttgtacg 39420786  T
Q  328 gatgagttagacctcgatattcsttaca 355  Q
    |||||||||| ||||||||||| |||||    
T  39420787 gatgagttaggcctcgatattcgttaca 39420814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 10862194 - 10862338
Alignment:
Q  137 gcatggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagc 233  Q
    |||||||||||| | |||| ||||||||||||| ||||   ||||||| || ||||| || || ||||| |||| | |||| || |||||||||||||||    
T  10862194 gcatggtatcagagcctatcgggtccatcgttgagcttcctgcatcgttcacgcttctggcccattggg-ccgggctgaagcgtaagggggtgtgttagc 10862292  T
Q  234 tgccaaactctcgggtgggatttagtcccacatcagatagataggatt 281  Q
     ||||| | |||| | |||||||||||||||||| |||||||| ||||    
T  10862293 ggccaa-cactcgag-gggatttagtcccacatcggatagataagatt 10862338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 33532839 - 33532772
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    |||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||    
T  33532839 gggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctcac 33532772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 355
Target Start/End: Complemental strand, 32810986 - 32810863
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    |||||||||||||||||||| |||| ||||||||||||||       ||||||||||||||||| || || ||||  ||     | |||||||| |||||    
T  32810986 ctcgggtgggatttagtcccgcatcggatagataggattcttgataagagtttataaagaggagacaatcatcaccttacaagccggttttgtggggatg 32810887  T
Q  332 agttagacctcgatattcsttaca 355  Q
    |||||| ||||||||||| |||||    
T  32810886 agttaggcctcgatattcgttaca 32810863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 28193563 - 28193499
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 202  Q
    ||||||||||| | ||||  |||| |||||||||||||||||||||| |||||||| || |||||    
T  28193563 catggtatcagagcctatcaggtctatcgttgggcttgcatcgtccacgcttcaggcccattggg 28193499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 4506146 - 4506111
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc 282  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4506146 ggtgggatttagtcccacatcggatagataggattc 4506111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 13538444 - 13538489
Alignment:
Q  414 tcaatttccaaagcatagattacacaacttttcataaaaagttact 459  Q
    ||||||||||| |||| || |||| |||||||||||||||||||||    
T  13538444 tcaatttccaatgcattgaatacataacttttcataaaaagttact 13538489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 33455016 - 33455061
Alignment:
Q  414 tcaatttccaaagcatagattacacaacttttcataaaaagttact 459  Q
    ||||||| |||  ||| |||||||||||||||||||||||||||||    
T  33455016 tcaatttacaatacattgattacacaacttttcataaaaagttact 33455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 17324124 - 17324092
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc 282  Q
    |||||||||| ||||||||||||||||||||||    
T  17324124 gggatttagttccacatcagatagataggattc 17324092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 946780 - 946908
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||  |||||||||||| | ||||  ||||||||||||||||| |||    
T  946780 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggctcgttgggaccgggctgaagcatgagggggtgtgttagcggcc 946879  T
Q  238 aaactctcgggtgggatttagtcccacatc 267  Q
     |||||||||||||||||||||||||||||    
T  946880 -aactctcgggtgggatttagtcccacatc 946908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 139 - 282
Target Start/End: Original strand, 33040362 - 33040503
Alignment:
Q  139 atggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcca 238  Q
    |||||||| | | |||| || ||||||||||||||||||||||||| |||||||| || || || |||| | |||| |||||| ||||||||||| ||||    
T  33040362 atggtatccgagcctatcggatccatcgttgggcttgcatcgtccacgcttcaggcccattcgg-ccgggctgaagcgtgaggaggtgtgttagcggcca 33040460  T
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc 282  Q
    | | |||| |||||||||||||||||||||||||||||||||||    
T  33040461 a-cactcgcgtgggatttagtcccacatcagatagataggattc 33040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 282
Target Start/End: Complemental strand, 84022 - 83881
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    |||||||||||   |||| ||||||||||||||||||||||| |||| |||||||| || ||||| | || | |||| ||||||||| |||||||| |||    
T  84022 catggtatcagatcctatcgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ctgggctgaagcgtgagggggggtgttagcggcc 83925  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc 282  Q
    || | ||||||||||||||||||||||||| |||| |||||||||    
T  83924 aa-cactcgggtgggatttagtcccacatcggatatataggattc 83881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 32395428 - 32395300
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||||||||||||||||||||||||||     | ||||||| ||    
T  32395428 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcctcactgtacaagccggttttgtatg 32395329  T
Q  328 gatgagttagacctcgatattcsttacat 356  Q
    |||||||||  ||||||||||| ||||||    
T  32395328 gatgagttacgcctcgatattcgttacat 32395300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 30329952 - 30330046
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttag 232  Q
    ||||||||||  | |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    ||||||||||||||||||||||    
T  30329952 catggtatcaaagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccgttgggaccgcgatgaagtgtgagggggtgtgttag 30330046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 33040198 - 33040318
Alignment:
Q  160 tccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagt 259  Q
    ||||||||||||||||||||||||| |||||| | || || |  |||| | |||| |||||||||||||||||| ||||| | |||| ||||||||||||    
T  33040198 tccatcgttgggcttgcatcgtccacgcttcaagcccattcgt-ccgggctgaagcgtgagggggtgtgttagcggccaa-cactcgcgtgggatttagt 33040295  T
Q  260 cccacatcagatagataggattc 282  Q
    |||||||| ||||||||||||||    
T  33040296 cccacatcggatagataggattc 33040318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 30329826 - 30329960
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    |||||||||| |||||||||||||||||| ||||||||||||||       |||||||||||||||||| ||||||||| |||    || ||||||| ||    
T  30329826 aactctcgggagggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggaactcctcaccgtacaagtcggttttgtatg 30329925  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    ||| |||||| ||||||||||| | ||||||||||    
T  30329926 gatcagttaggcctcgatattcgtgacatggtatc 30329960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 349
Target Start/End: Complemental strand, 22196541 - 22196319
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||| | | |||||||||||||||||||||||   ||||||||||  ||||||| || |||| ||| | | |||| |||||||||||| |||||     
T  22196541 catggtatccgagcctattgggtccatcgttgggctttttgcatcgtccacacttcaggcccattgg-accaggctgaagcgtgagggggtgttttagcg 22196443  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttg 323  Q
    ||||| | ||||| ||||||||||||||||||| ||||||||| | ||       |||||||||||||||||||||||||||| |||     | ||||||    
T  22196442 gccaa-cactcgg-tgggatttagtcccacatcggatagatagtactcttgagaagagtttataaagaggaggcactcctcaccgtaaaagccggttttg 22196345  T
Q  324 tgtggatgagttagacctcgatattc 349  Q
    |  ||||||||||| |||||||||||    
T  22196344 taaggatgagttaggcctcgatattc 22196319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 29396469 - 29396330
Alignment:
Q  226 gtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta---- 314  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||| |||        
T  29396469 gtgttagcggccaa-ctctcgggtgggatttagtcccacatcagatagataggaatcttgagaaaagtttataaagaggaggcactcctcaccgtacaag 29396371  T
Q  315 tcagttttgtgtggatgagttagacctcgatattcsttaca 355  Q
     | |||||||  ||||||||||| ||||||||||| |||||    
T  29396370 ccggttttgtacggatgagttaggcctcgatattcgttaca 29396330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 84144 - 84014
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    ||||||||||||||||||||||||| |||| |||||||||       |||||||||||||||||||||||||||| |||     | ||||||| ||||||    
T  84144 ctcgggtgggatttagtcccacatcggatatataggattcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttttgtatggatg 84045  T
Q  332 agttagacctcgatattcsttacatggtatc 362  Q
    ||||||  |||||||||| | ||||||||||    
T  84044 agttaggtctcgatattcatgacatggtatc 84014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 18541878 - 18541983
Alignment:
Q  174 tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatag 273  Q
    ||||||||||| |||||||| || ||||| |||| | |||| ||||||||| |||||||| ||||| | || || |||||||||||| |||||| |||||    
T  18541878 tgcatcgtccacgcttcaggcccattggg-ccgggctgaagcgtgagggggggtgttagcggccaa-cacttgg-tgggatttagtctcacatcggatag 18541974  T
Q  274 ataggattc 282  Q
    |||||||||    
T  18541975 ataggattc 18541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 19439861 - 19439928
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    |||||||||||||||||||||||||||||||||       || |||||||||||||| ||||||||||    
T  19439861 gggatttagtcccacatcagatagataggattcttgagaagaatttataaagaggagacactcctcac 19439928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 5096006 - 5095968
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggatt 281  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  5096006 ctcgggtgggatttactcccacatcggatagataggatt 5095968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 946733 - 946761
Alignment:
Q  239 aactctcgggtgggatttagtcccacatc 267  Q
    |||||||||||||||||||||||||||||    
T  946733 aactctcgggtgggatttagtcccacatc 946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 16161411 - 16161447
Alignment:
Q  365 gggcactctttaagcattccaatttaggagattattt 401  Q
    |||||||||||||||||||||| |||||| |||||||    
T  16161411 gggcactctttaagcattccaaattaggaaattattt 16161447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 17016195 - 17016167
Alignment:
Q  251 ggatttagtcccacatcagatagatagga 279  Q
    |||||||||||||||||||||||||||||    
T  17016195 ggatttagtcccacatcagatagatagga 17016167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 356
Target Start/End: Original strand, 29228564 - 29228793
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||||| | ||||  |||||||||||||||||   ||||| ||||  ||||||| || ||||| |||| | |||| ||||||||||||||||||     
T  29228564 catggtatcagagcctatcaggtccatcgttgggcttcctgcatc-tccacacttcaggcccattggg-ccgggctgaagcgtgagggggtgtgttagcg 29228661  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttg 323  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||       ||||||||||||||||||||||||||||||||     | | ||||    
T  29228662 gccaa-ctctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcctcactgtacaagccggatttg 29228760  T
Q  324 tgtggatgagttagacctcgatattcsttacat 356  Q
    |  ||||||||||| ||||||||||| ||||||    
T  29228761 tagggatgagttaggcctcgatattcgttacat 29228793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 358
Target Start/End: Original strand, 17294946 - 17295098
Alignment:
Q  216 gtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctc 308  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  17294946 gtgagggggtgtgttagcggccaa-cactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctc 17295044  T
Q  309 actgta----tcagttttgtgtggatgagttagacctcgatattcsttacatgg 358  Q
    || |||     | |||||||  ||||||||||| ||||||||||| ||||||||    
T  17295045 accgtacaagccggttttgtagggatgagttaggcctcgatattcgttacatgg 17295098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 17294773 - 17294900
Alignment:
Q  152 ctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgg 251  Q
    |||| ||||||||||||||||||||||| |||| |||||||| || ||||| | || |  ||| |||||||||||||||||| ||||| | |||||||||    
T  17294773 ctatcgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ctgggctaaagcgtgagggggtgtgttagcggccaa-cactcgggtgg 17294869  T
Q  252 gatttagtcccacatcagatagataggattc 282  Q
    |||||||||||||||| ||||||||||||||    
T  17294870 gatttagtcccacatcggatagataggattc 17294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 45858771 - 45858912
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| | |||||| || ||||| |||| | |||| ||||| |||||||||||| |||    
T  45858771 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgtttcaggcccattggg-ccgggctgaagcgtgagagggtgtgttagcggcc 45858869  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc 282  Q
     ||| |||| | ||||||||||| |||||| ||||||||||||||    
T  45858870 -aacactcgag-gggatttagtctcacatcggatagataggattc 45858912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 29228438 - 29228572
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||       |||||||||||||||||||||||||||| |||     | |||||||  |    
T  29228438 aactctcgggtgggatttagacccacatcggatagataggaatcttgagaagagtttataaagaggaggcactcctcaccgtacaagccggttttgtagg 29228537  T
Q  328 gatgagttagacctcgatattcsttacatggtatc 362  Q
    |||||||||| ||||||||||| ||||||||||||    
T  29228538 gatgagttaggcctcgatattcgttacatggtatc 29228572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 4187423 - 4187356
Alignment:
Q  211 gaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagatagga 279  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||    
T  4187423 gaagtgtgagggggtgtgttagcggccaa-ctctcgagtgggatttagtcccacatcggatagatagga 4187356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 279
Target Start/End: Complemental strand, 30604675 - 30604534
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    ||||||||||| | ||||  |||||||| |||||||   |||||| ||||  ||||||| || || ||||||| | |||| ||||||||||||||||||     
T  30604675 catggtatcagagcctatctggtccatcattgggcttcctgcatc-tccacacttcaggcccatt-ggaccgggctgaagcgtgagggggtgtgttagcg 30604578  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagatagga 279  Q
    | | ||||||||||||||||||||||||||||| |||||||||||    
T  30604577 gtc-aactctcgggtgggatttagtcccacatcggatagatagga 30604534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 45858656 - 45858779
Alignment:
Q  250 gggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatgagttaga 338  Q
    |||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||| |||    || ||||| |  |||||||||||     
T  45858656 gggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctcaccgtacaagtcggttttataaggatgagttagg 45858755  T
Q  339 cctcgatattcsttacatggtatc 362  Q
    |||| |||||| ||||||||||||    
T  45858756 cctcaatattcgttacatggtatc 45858779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 12287846 - 12287965
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatca----gttttgtgtggatgagtt 335  Q
    ||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||||||||||| |||  |    |||||||  |||||||||    
T  12287846 ggtgggatttagtcccacatcggatagataggattcttgaaaagaggttataaagaggaggcactcctcaccgtacaagctggttttgtaaggatgagtt 12287945  T
Q  336 agacctcgatattcsttaca 355  Q
    || ||||||||||| |||||    
T  12287946 aggcctcgatattcgttaca 12287965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 355
Target Start/End: Complemental strand, 33562237 - 33562114
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    |||||||||| |||||||||||||| ||||||||||||||       ||| |||||||||||||||||||||||| |||     | |||||||| |||||    
T  33562237 ctcgggtgggttttagtcccacatcggatagataggattcttgaaaagaggttataaagaggaggcactcctcaccgtacaagccggttttgtggggatg 33562138  T
Q  332 agttagacctcgatattcsttaca 355  Q
    |||||| ||| ||||||| |||||    
T  33562137 agttaggccttgatattcgttaca 33562114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 31411499 - 31411429
Alignment:
Q  211 gaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc 282  Q
    |||| ||||||||||||||||||  |||| | |||||||||||||||||| |||||| ||||||||||||||    
T  31411499 gaagcgtgagggggtgtgttagcgaccaa-cactcgggtgggatttagtctcacatcggatagataggattc 31411429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 31411670 - 31411631
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc 282  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31411670 ctcgggtgggatttagtcccacatcagatagataggattc 31411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 51722230 - 51722322
Alignment:
Q  225 tgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataa-agaggaggcactcctcac 310  Q
    ||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||       |||||||||| ||||||||||||||||||    
T  51722230 tgtgttagcagccaa-cactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttataagagaggaggcactcctcac 51722322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 4187627 - 4187507
Alignment:
Q  239 aactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtg 327  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||       |||||||| ||||||||||||||||||| |||     | ||||||| ||    
T  4187627 aactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttat-aagaggaggcactcctcaccgtacaagccggttttgtatg 4187529  T
Q  328 gatgagttagacctcgatattc 349  Q
    |||||||||  |||||||||||    
T  4187528 gatgagttacgcctcgatattc 4187507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 45443218 - 45443285
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcct 307  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| |||||||||||    
T  45443218 ggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagatgaggcactcct 45443285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 18585036 - 18585106
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||| ||||||||||||||       || ||||||||||||||| |||||||||    
T  18585036 ggtgggatttagtcccacatcggatagataggattcttgagaagattttataaagaggagggactcctcac 18585106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 31411537 - 31411505
Alignment:
Q  157 gggtccatcgttgggcttgcatcgtccatgctt 189  Q
    |||||||||||||||||||||||||||| ||||    
T  31411537 gggtccatcgttgggcttgcatcgtccacgctt 31411505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 48947252 - 48947296
Alignment:
Q  414 tcaatttccaaagcatagattacacaacttttcataaaaagttac 458  Q
    ||||||||||| |||  |||||||||| |||||||||||||||||    
T  48947252 tcaatttccaatgcactgattacacaaattttcataaaaagttac 48947296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 26842714 - 26842844
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatcag----ttttgtgtggatg 331  Q
    ||||||||||||||||||||||||| |||||||||| |||       |||||||||||||||||||||||||||| |||  ||    ||||||| |||||    
T  26842714 ctcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcaccgtacaagctggttttgtggggatg 26842813  T
Q  332 agttagacctcgatattcsttacatggtatc 362  Q
    |||||| ||||||||||| ||||||||||||    
T  26842814 agttaggcctcgatattcgttacatggtatc 26842844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 16193912 - 16194012
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||| || |||| || | |||| ||||||||||||| |||| |||    
T  16193912 catggtatcagagtctatcgggtccatcgttgggcttgcatagtccacgcttcaggtccatt-ggacggggctgaagcgtgagggggtgtgctagcggcc 16194010  T
Q  238 aa 239  Q
    ||    
T  16194011 aa 16194012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 33396304 - 33396379
Alignment:
Q  246 gggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta 314  Q
    |||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||| ||||    
T  33396304 gggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctcattgta 33396379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 25184119 - 25184203
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgaggggg 224  Q
    ||||||||||| | |||| ||||||||||||||||||||||| |||| |||||||| || ||||| |||| | ||||||||||||||    
T  25184119 catggtatcagagcctatcgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ccgggctgaagtgtgaggggg 25184203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 25184204 - 25184327
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta----tcagttttgtgtggatg 331  Q
    |||||||||||||||||||| |||| ||||||||||||||       |||||||||||||||| ||| |||||||  ||     | |||||||| |||||    
T  25184204 ctcgggtgggatttagtcccgcatcggatagataggattcttgataagagtttataaagaggaagcaatcctcaccttacaagccggttttgtggggatg 25184303  T
Q  332 agttagacctcgatattcsttaca 355  Q
    |||||| ||||||||||| |||||    
T  25184304 agttaggcctcgatattcgttaca 25184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 33396489 - 33396557
Alignment:
Q  211 gaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggatt 281  Q
    |||| |||| ||||||||||||| ||||| | ||||||||||||||||| ||||||| |||||||||||||    
T  33396489 gaagcgtgacggggtgtgttagcggccaa-cactcgggtgggatttagt-ccacatcggatagataggatt 33396557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 362
Target Start/End: Original strand, 16193889 - 16193920
Alignment:
Q  331 gagttagacctcgatattcsttacatggtatc 362  Q
    ||||||||||||||||||| ||||||||||||    
T  16193889 gagttagacctcgatattcgttacatggtatc 16193920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 15102688 - 15102660
Alignment:
Q  283 gagtttataaagaggaggcactcctcact 311  Q
    |||||||||||||||||||||||||||||    
T  15102688 gagtttataaagaggaggcactcctcact 15102660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 362
Target Start/End: Complemental strand, 17607425 - 17607194
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| | |||| ||||| || |||||||||||||| |||| |||| ||| ||  |||| |||  | |||| |||||||| ||||||||| |||    
T  17607425 catggtatcagagcctatcgggtcaattgttgggcttgcatcatccacgctttaggcccaatggg-ccgagctgaagcgtgagggg-tgtgttagcggcc 17607328  T
Q  238 aaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtat----cagttttgtgt 326  Q
    || | |||| |||| |||||||| |||||| ||||||||||||||       |||||||||||||||||||||| ||||| |||     |||||||||      
T  17607327 aa-cactcgagtgg-atttagtctcacatcggatagataggattcttgtgaagagtttataaagaggaggcactactcaccgtacaagccagttttgtaa 17607230  T
Q  327 ggatgagttagacctcgatattcsttacatggtatc 362  Q
    ||||||||||| ||||||||||| ||||||||||||    
T  17607229 ggatgagttaggcctcgatattcgttacatggtatc 17607194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 282
Target Start/End: Complemental strand, 38287952 - 38287808
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgc---atcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagct 234  Q
    |||| |||||| | ||||||||||||||||||||||| |   |||||||| |||||||| || |||| | ||| | |||| |||||||||||||||||      
T  38287952 catgatatcagagcctattgggtccatcgttgggctttctacatcgtccacgcttcaggcccattgg-atcgggctgaagcgtgagggggtgtgttaggg 38287854  T
Q  235 gccaaactctcgggtgggatttagtcccacatcagatagataggattc 282  Q
    ||||| | ||||| ||||||||||||||||||| ||||||||||||||    
T  38287853 gccaa-cactcgg-tgggatttagtcccacatcggatagataggattc 38287808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 314
Target Start/End: Original strand, 8605381 - 8605562
Alignment:
Q  140 tggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgc 236  Q
    ||||||||||  |||| |||||||||||||||||   ||||||||||| | |||||| || ||||| |||| | |||| |||||||||||||||||| ||    
T  8605381 tggtatcaggacctatcgggtccatcgttgggcttcctgcatcgtccacgattcaggcccattggg-ccgggctgaagcgtgagggggtgtgttagcggc 8605479  T
Q  237 caaactctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgta 314  Q
    | ||| ||| ||||  |||||||| ||| || |||| |||||||||       ||||||||| ||||||||||||||||||||||    
T  8605480 c-aacactc-ggtgacatttagtctcacgtcggataaataggattcttgagaagagtttatatagaggaggcactcctcactgta 8605562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 18464064 - 18464138
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||    
T  18464064 ctcgggtgggatttagtcccacatcagatagataggattcttgagaagagtttataaagagaaggcactcctcac 18464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 35908676 - 35908802
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcactgtatcag----ttttgtgtggatgagtt 335  Q
    ||||||||||||||||||||| | |||||||||| |       |||||||||||||| ||||||||||||| |||  ||    ||||||  |||||||||    
T  35908676 ggtgggatttagtcccacatcgggtagataggatacttgagaagagtttataaagagaaggcactcctcaccgtacaagccggttttgtaaggatgagtt 35908775  T
Q  336 agacctcgatattcsttacatggtatc 362  Q
    || ||||||||||| ||||||||||||    
T  35908776 aggcctcgatattcgttacatggtatc 35908802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 14019802 - 14019876
Alignment:
Q  243 ctcgggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||    
T  14019802 ctcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttataaagaggaggcactcctcac 14019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 15711494 - 15711564
Alignment:
Q  247 ggtgggatttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||    
T  15711494 ggtgggatttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggcactcctcac 15711564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 20232538 - 20232475
Alignment:
Q  211 gaagtgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagat 275  Q
    |||| ||||||| |||||||||| ||||| | ||||||||||||||||||||||||| |||||||    
T  20232538 gaagcgtgagggtgtgtgttagcggccaa-cactcgggtgggatttagtcccacatcggatagat 20232475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 9596127 - 9596029
Alignment:
Q  217 tgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc--gag-----tttataaagaggaggcactcctca 309  Q
    ||||| ||||||||||| ||||| | ||||| ||||||||||| ||||||| ||||||||||||||  |||     ||||||||||||||||||||||||    
T  9596127 tgaggaggtgtgttagcggccaa-cactcgg-tgggatttagttccacatcggatagataggattcttgagaatattttataaagaggaggcactcctca 9596030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 165693 - 165852
Alignment:
Q  155 ttgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgccaaactctcgggtgggat 254  Q
    ||||||||||||||||| ||||||||||||  ||||||| || ||||| |||| | |||| |||||||||||||||||| ||| ||| |||| | |||||    
T  165693 ttgggtccatcgttgggtttgcatcgtccacacttcaggcccattggg-ccgggctgaagcgtgagggggtgtgttagcggcc-aacactcgag-gggat 165789  T
Q  255 ttagtcccacatcagatagataggattc-------gagtttataaagaggaggcactcctcac 310  Q
    ||||||| ||||| ||||||||| ||||       ||||||||||||||||||||||| ||||    
T  165790 ttagtcctacatcggatagatagaattcttgagaagagtttataaagaggaggcactcttcac 165852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 3108 - 2983
Alignment:
Q  138 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgttagctgcc 237  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||  | ||||| | ||  | ||| |||||||||||||||||| |||    
T  3108 catggtatcagagtctatcgggtccatcgttgggcttgcaccgtccacgcttcaggcacattgggccaggtta-aagcgtgagggggtgtgttagcggcc 3010  T
Q  238 aaactctcgggtgggatttagtcccacat 266  Q
     ||| ||| ||||||||||||||||||||    
T  3009 -aacactc-ggtgggatttagtcccacat 2983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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