View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-30 (Length: 277)
Name: NF1457-2-Insertion-30
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-143
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 30106111 - 30106380
Alignment:
| Q |
8 |
ataaaacccacaaacatactactagacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaacca |
107 |
Q |
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| T |
30106111 |
ataaaacccacaaacatactactagacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaacca |
30106210 |
T |
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| Q |
108 |
cmtttgtaggtggaacttacgggtacatagaccctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggttgtgcttgt |
207 |
Q |
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| T |
30106211 |
catttgtaggtggaacttacgggtacatagatcctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggtcgtgcttgt |
30106310 |
T |
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| Q |
208 |
agagctcataaccggtagaaagcctatttcattctatgatgaagatgacggtcagaatttgattgcacat |
277 |
Q |
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| T |
30106311 |
agagctcataaccagtagaaagcctatttcattctatgatgaagatgacggtcagaatttgattgcacat |
30106380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 30116214 - 30116459
Alignment:
| Q |
20 |
aacatactactagacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaaccacmtttgtaggtg |
119 |
Q |
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| T |
30116214 |
aacatactcctagacaataactatagtgccaaagtgtctgattttggaacatctagatcaatcccattagataagactcatttaaccacagcagtaggag |
30116313 |
T |
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| Q |
120 |
gaacttacgggtacatagaccctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggttgtgcttgtagagctcataac |
219 |
Q |
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| T |
30116314 |
gtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtgcttgttgagcttataac |
30116413 |
T |
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| Q |
220 |
cggtagaaagcctatttcattctatgatgaagatgacggtcagaat |
265 |
Q |
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| T |
30116414 |
cggtagaaagccaataacattcaatgatgaagatgagggtcagaat |
30116459 |
T |
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