View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-6 (Length: 427)
Name: NF1457-2-Insertion-6
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 111 - 306
Target Start/End: Original strand, 609363 - 609558
Alignment:
| Q |
111 |
caaatgagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctcct |
210 |
Q |
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| T |
609363 |
caaatgagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctcct |
609462 |
T |
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| Q |
211 |
tcttctacttcccctctcatacctctccattttcacttcactctcaactttccaaccattttcttccttctctatacactcaacaacatgtgtcgg |
306 |
Q |
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| T |
609463 |
tcttctacttcccctctcatacctctccattttcacttcactctcaactttccaaccattttcttccttctctatacactcaacaacacgtgtcgg |
609558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 609583 - 609703
Alignment:
| Q |
307 |
aataccttcttcttctactacttccttcacactctcctcttcttttgttggggagaccgagggagcgtcaggagcaacaacaaccggtgaattctctacg |
406 |
Q |
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| T |
609583 |
aataccttcttcttctactacttccttcacactctcctcttcttttgttggggagaccgagggagcgtcaagagcaacaacaaccggtgaattctctacg |
609682 |
T |
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| Q |
407 |
tcctcaaacccttgattttca |
427 |
Q |
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| T |
609683 |
tcctcaaacccttgattttca |
609703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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