View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-7 (Length: 520)
Name: NF1457-2-Insertion-7
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 25526437 - 25525923
Alignment:
| Q |
8 |
cagcatacattagccaaattgatgatcacataggagaactaacagtgagagaaacttttgattttgcaaatagatgtcaaggttcaaatgatgcaggtac |
107 |
Q |
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| T |
25526437 |
cagcatacattagccaaattgatgatcacataggagaactaacagtgagagaaacttttgattttgcaaatagatgtcaaggttcaaatgatgcaggtac |
25526338 |
T |
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| Q |
108 |
attataatattacctttattatattcatttttaatctaaatcaaatttctgaactaaattaaatcatttaatttcttaatcagagttattgaaaaatctg |
207 |
Q |
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| T |
25526337 |
attataatattacctttattatattcatttttaatctaaatcaaatttctgaactaaattaaatcatttaatttcttaatcagagttattgaaaaatctg |
25526238 |
T |
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| Q |
208 |
gaaagcttagaaaaggnnnnnnnggtgatgccaagtccagaaattgatgcatttatgaaggttggttgcaaatgtatatgaaaattaaatgatgcatgca |
307 |
Q |
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| T |
25526237 |
gaaagcttagaaaaggaaaaaaaggtgatgccaagtccagaaattgatgcatttatgaaggttggttgcaaatgtatatgaaaattaaatgatgcatgca |
25526138 |
T |
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| Q |
308 |
tgcatcataaatac--tgtgttctgaaattgatttgattctacaggcagcatctgttggtggcaaaaagcacaatgtaatgacagattatattttgaaag |
405 |
Q |
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| T |
25526137 |
tgcatcctaaatactttgtgttctgaaattgatttgactctacaggcagcatctgttggtggcaaaaagcacaatgtaatgacagattatattttgaaag |
25526038 |
T |
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| Q |
406 |
tgcttggtcttgatgtatgttctgatactgttgttggtagtgatatgataagagggatatctggtggccaaaagaagagagtaacaacaggtgatttatt |
505 |
Q |
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| T |
25526037 |
tgcttggtcttgatgtatgttctgatactgttgttggtagtgatatgataagagggatatctggtggccaaaagaagagagtaacaacaggtgatttatt |
25525938 |
T |
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| Q |
506 |
cataagttgttttta |
520 |
Q |
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| T |
25525937 |
cataagttgttttta |
25525923 |
T |
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Back To:
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 29773570 - 29773659
Alignment:
| Q |
344 |
tctacaggcagcatctgttggtggcaaaaagcacaatgtaatgacagattatattttgaaagtgcttggtcttgatgtatgttctgatac |
433 |
Q |
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| T |
29773570 |
tctacaggcatcctctgttgggggtaaaaagcacagtgtgaacactgattacattttgaaggtacttggtcttgatgtatgttcagatac |
29773659 |
T |
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