View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457-2-Insertion-8 (Length: 600)
Name: NF1457-2-Insertion-8
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Complemental strand, 44415071 - 44414609
Alignment:
| Q |
8 |
ccacttgcatctctagatgttgagtttgtcataccattggtaatcttatcttattatacatatttataggacaataagtcaactagggaaggcaaggcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44415071 |
ccacttgcatctctagatgttgagtttgtcataccattggtaatcttatcttattatacatatttataggacaataagtcaactagggaaggcaaggcca |
44414972 |
T |
|
| Q |
108 |
ggccgtggggcacagcactgacatcaagagggttggatcaaattataaaactatatgggagttcatataatatatatttttgaataaaagaagtagaaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44414971 |
ggccgtggggcacagcactgacatcaagagggttggatcaaattataaaactatatgggagttcatataatatatatttttgaataaaagaagtagaaga |
44414872 |
T |
|
| Q |
208 |
gggtgacaaattgaaagtgactactaatttattacaaaaactgaaaattgatatttggagcatgttctgagatttttgtgaaagtgaagcatagatgatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44414871 |
gggtgacaaattgaaagtgactactaatttattacaaaaactgaaaattgatatttggagcatgttctgagatttatgtgaaagtgaagcatagatgatt |
44414772 |
T |
|
| Q |
308 |
ctttgtctgttagcatagtaacctcttcattctttcaacttgtttggcgcctgccatgaagactgttctttccacaggtttcttgttatgttgctccctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44414771 |
ctttgtctgttagcatagtaacctcttcattctttcaacttgtttggcgcctgccatgaagactgttctttccacaggtttcttgttatgttgctccctt |
44414672 |
T |
|
| Q |
408 |
ctgttcctacttttgggttcttcaacttcacttcctctatgtgttgactcaagtatgtatatc |
470 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44414671 |
ctgttcctacttttggattcttcaacttcacttcctctatgtgttgactcaagtatgtatatc |
44414609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University