View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457-2-Insertion-9 (Length: 939)
Name: NF1457-2-Insertion-9
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-9 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 612; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 108 - 924
Target Start/End: Complemental strand, 6622136 - 6621306
Alignment:
| Q |
108 |
gactaagtcaaatcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcnnnnnnnctaacacgaaagatccaaaaacca |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6622136 |
gactaagtcaaatcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcttttttcctaacacgaaagatccaaaaacca |
6622037 |
T |
|
| Q |
208 |
aaataattttacctttcatagttttatgtcctaaacaaaactcgacaatagttcttcgataaggttctaatctcttttgcatatctactccaatgatgaa |
307 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6622036 |
aaatatttttgactttcatagttttatgtcctaaacaaaactcgacaatagttcttcgatgaggttctaatctcttctgcatatctactccaatgatgaa |
6621937 |
T |
|
| Q |
308 |
tgtcatctttactcccttgtagtgttctccaactaatttctctgcttttttaacatcttaaactgcatcataaatgataaacttatgtttatactgtgaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6621936 |
tgtcatctttactcccttgtagtgttctccaactaatttctctgcttttttaacatcttaaactgcttcataaatgataaacttatgtttatactgtgaa |
6621837 |
T |
|
| Q |
408 |
tttagtatcaaacaaacatatccaaaaatagatgcatttcagcatgtagatgacaaaggaacatacaaatggcatattatggtattttctagatagaaac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6621836 |
tttagtatcaaacaaacatatccaaaaatagatgcatttcagcatgtagatgacaaaggaacatacaaatggcatattatggtattttttagatagaaac |
6621737 |
T |
|
| Q |
508 |
atttaacatttaagcatgtagatgtcattttagcattactaccaagaaacaaatgaaactaaaattatatacatatcatgaatattctatgaaagattgc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
6621736 |
atttaacatttaagcatgtagatgtcattttagcattactaccaagaaacaaatgaaactaaaattatatacatatcatgaatattctatgaaagattac |
6621637 |
T |
|
| Q |
608 |
aaacattctggttctaaaatattcatcaagattatgatctgacataaaacattcttgatttttgcgtcctgactatgagtattaacttaatcattaaatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6621636 |
aaacattctggttctaaaatattcatcaagaatatgatctgacataaaacattctttatttttgcgtcctaactatgagtattaacttaatcattaaatt |
6621537 |
T |
|
| Q |
708 |
cttattttcattt-taaagtggctggaatgactcatccgaaagatcatacatataaagcat-atagtatttttcat-acatgtaaagatttcaataaaac |
804 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6621536 |
cttattttcatttaaaaagtggctggaatgactcatccaaaagatcatacatacaaagcataatagtatttttcataacatgtaaagatttcaataaaac |
6621437 |
T |
|
| Q |
805 |
aggc-aattatgag-nnnnnnncgctaacatgaatggtatatatcatgg----acatatccatcat-aaaaacattaac-aaacaaaatataat-aaact |
895 |
Q |
| |
|
||| |||||| | |||||||| |||||||| ||||||||| |||||| |||||| |||||||||||| |||||||||||||| ||||| |
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|
| T |
6621436 |
tggcaaattatccgtaaaaaaacgctaacaagaatggtacatatcatggacatacatattcatcataaaaaacattaacaaaacaaaatataataaaact |
6621337 |
T |
|
| Q |
896 |
gcc-atttacag-atgtagtactaatatgtt |
924 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
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|
| T |
6621336 |
gccaatttacagaatgtagtactaatatgtt |
6621306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 554 - 759
Target Start/End: Original strand, 6393705 - 6393910
Alignment:
| Q |
554 |
aaacaaatgaaactaaaattatatacatatcatgaatattctatgaaagattgcaaacattctggttctaaaatattcatcaagattatgatctgacata |
653 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||||| | ||||||| ||||| |
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|
| T |
6393705 |
aaacaaatgaaactaaaaccatatacatatcatgaatgttcaatggaagattacaaacattctggctctaaaatattcatcatcaatatgatcagacatc |
6393804 |
T |
|
| Q |
654 |
aaacattcttgatttttgcgtcctgactatgagtattaacttaatcattaaattcttattttcatttt-aaagtggctggaatgactcatccgaaagatc |
752 |
Q |
| |
|
| ||||||||| |||||||||| | |||| |||||||||| | ||||||| ||||||| | ||||||| |||| ||| |||||||| ||||||||| ||| |
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|
| T |
6393805 |
atacattcttgctttttgcgtcttaactaagagtattaacatcatcattagattctta-tctcattttaaaagaggcaggaatgacacatccgaaatatc |
6393903 |
T |
|
| Q |
753 |
atacata |
759 |
Q |
| |
|
||||||| |
|
|
| T |
6393904 |
atacata |
6393910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 104 - 498
Target Start/End: Original strand, 6393316 - 6393670
Alignment:
| Q |
104 |
tcaagactaagtcaaatcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcnnnnnnnctaacacgaaagatccaaaa |
203 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| || | ||| ||||| | ||||| |||||| |
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| T |
6393316 |
tcaatactaaggcaattcttttaaacggataaaacttcttccttccaaaatacaatctata--gtttcatatcttttttcctaactcaaaagagccaaaa |
6393413 |
T |
|
| Q |
204 |
accaaaataattttacctttcatagttttatgtcctaaacaaaactcgacaatagttcttcgataaggttctaatctcttttgcatatctactccaatga |
303 |
Q |
| |
|
|| ||||||||||| || ||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |
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|
| T |
6393414 |
actaaaataattttgactatcatagtttcatatcctaaacaaaactcgacaatagttct-----------ctaatctcttccgcatatctactccaaaga |
6393502 |
T |
|
| Q |
304 |
tgaatgtcatctttactcccttgtagtgttctccaactaatttctctgcttttttaacatcttaaactgcatcataaatgataaacttatgtttatactg |
403 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||| |
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| T |
6393503 |
tgttagtcatctt-actcccttgtagtgttctcccactaatttctctg---------------------catcataaatgacaaatgtatgtttatactg |
6393580 |
T |
|
| Q |
404 |
tgaatttagtatcaaacaaacatatccaaaaatagatgcatttcagcatgtagatgacaaaggaacatacaaatggcatattatggtattttcta |
498 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||| |||| ||||||||||||| || ||||| |||||||||||||||||||| |||||| |
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|
| T |
6393581 |
t-----tagtgtcaaacaaacaaatccaaaaatagatatatttaagcatgtagatgaacaaagaacaaacaaatggcatattatggtactttcta |
6393670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 295 - 477
Target Start/End: Original strand, 14819056 - 14819239
Alignment:
| Q |
295 |
ctccaatgatgaatgtcatctttactcccttgtagtgttctccaactaatttctctgcttttttaacatctt---aaactgcatcataaatgataaactt |
391 |
Q |
| |
|
||||||||||| ||||| || || ||||| ||||| |||||| | |||| ||||||| ||||| |||||||| |||||||||||| ||| | |||||| |
|
|
| T |
14819056 |
ctccaatgatgtatgtc-tccttgctcccctgtagagttctctagctaacttctctggttttt-aacatcttcttaaactgcatcattaataacaaactt |
14819153 |
T |
|
| Q |
392 |
atgtttatactgtgaatttagtatcaaacaaacatatccaaaaatagatgcatttcagcatgtagatgacaaaggaacatacaaat |
477 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| || |||||||||||| |
|
|
| T |
14819154 |
atgtttatactgttaatttagtatcaaacaaacaaatccaaaaatagatacatttatgcatgtagatgaccaaagaacatacaaat |
14819239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 10705297 - 10705135
Alignment:
| Q |
104 |
tcaagactaagtcaaatcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcnnnnnnnctaacacgaaagatccaaaa |
203 |
Q |
| |
|
|||| |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| |||||| |
|
|
| T |
10705297 |
tcaaaactaaggcaattcttttaaaccgataaaacttctttcttccaaaatacaatctatagggcagaagatattttttcctaactcgaaagagccaaaa |
10705198 |
T |
|
| Q |
204 |
accaaaataattttacctttcatagttttatgtcctaaacaaaactcgacaatagttcttcgat |
267 |
Q |
| |
|
| |||||||||||| |||| ||||||| || |||||||| || || ||||||||||||||||| |
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|
| T |
10705197 |
atcaaaataattttgactttaatagtttcatatcctaaac-aatcttgacaatagttcttcgat |
10705135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 105 - 268
Target Start/End: Original strand, 14818890 - 14819053
Alignment:
| Q |
105 |
caagactaagtcaaatcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcnnnnnnnctaacacgaaagatccaaaaa |
204 |
Q |
| |
|
|||||||||| || |||||||||| |||||||| ||||||| | ||| ||| ||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
14818890 |
caagactaaggtaattcttttaaacagataaaacatctttctagcgaaacacagtctataaggtaaaagatcttttttcctaacacaaaagagccaaaaa |
14818989 |
T |
|
| Q |
205 |
ccaaaataattttacctttcatagttttatgtcctaaacaaaactcgacaatagttcttcgata |
268 |
Q |
| |
|
||||||||||| |||| ||||||| || ||| |||||||||||||||| ||||||| |||| |
|
|
| T |
14818990 |
ccaaaataattccgactttgatagtttcatatcccaaacaaaactcgacaacagttctttgata |
14819053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 663
Target Start/End: Original strand, 14819340 - 14819429
Alignment:
| Q |
573 |
tatatacatatcatgaatattctatgaaagattgcaaacattctggttctaaaatattcatcaagattatgatctgacataaaacattctt |
663 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| | |||||||| ||| |||| ||||||||||| || |||||| | |||| |||||||||| |
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|
| T |
14819340 |
tatatatatatcatgaat-ttcaatgaaagagtacaaacattttggctctagaatattcatcatgaatatgatttaacatcaaacattctt |
14819429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 120 - 296
Target Start/End: Complemental strand, 15093223 - 15093046
Alignment:
| Q |
120 |
tcttttaaacggataaaacttctttcttccaaaatacaatctataaggtagaagatcnnnnnnnctaacacgaaagatccaaaaaccaaaataattttac |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||||| | |||||| ||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
15093223 |
tcttttaaacagataaaacttctttcttccgaaatacagtctataacg---aagatcttttttcctaactcgaaagagcaaaaaaccaaaataattttaa |
15093127 |
T |
|
| Q |
220 |
ctttcata----gttttatgtcctaaacaaaactcgacaatagttcttcgataaggttctaatctcttttgcatatctact |
296 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
15093126 |
ctttcatatatagtttcatatcctaaacaaaactcgacaatagttcttcgatgagtctctaatctcttctgcatatctact |
15093046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 365 - 460
Target Start/End: Complemental strand, 15093035 - 15092940
Alignment:
| Q |
365 |
ttaaactgcatcataaatgataaacttatgtttatactgtgaatttagtatcaaacaaacatatccaaaaatagatgcatttcagcatgtagatga |
460 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
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|
| T |
15093035 |
ttaaacttcatcataaatgacaaacttatgtttatactataaatttagtatcaaacaaacaaatccaaaaatagatacatttaagcatgtagatga |
15092940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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