View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14570_high_8 (Length: 287)

Name: NF14570_high_8
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14570_high_8
NF14570_high_8
[»] chr7 (2 HSPs)
chr7 (140-237)||(10597682-10597779)
chr7 (11-69)||(10597851-10597908)
[»] chr5 (2 HSPs)
chr5 (197-266)||(113946-114015)
chr5 (197-259)||(23689244-23689306)
[»] chr8 (1 HSPs)
chr8 (171-270)||(24750424-24750524)
[»] chr4 (2 HSPs)
chr4 (145-264)||(56367953-56368071)
chr4 (148-267)||(10398655-10398774)
[»] chr1 (3 HSPs)
chr1 (165-270)||(18104143-18104248)
chr1 (197-266)||(18439574-18439643)
chr1 (197-266)||(18450432-18450501)
[»] chr2 (1 HSPs)
chr2 (231-265)||(31483284-31483318)
[»] scaffold0084 (1 HSPs)
scaffold0084 (239-267)||(30989-31017)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 10597779 - 10597682
Alignment:
Q  140 gtcagatgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcat 237  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10597779 gtcaaatgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttatgagaaaccattgcacaaatatgtcat 10597682  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 10597908 - 10597851
Alignment:
Q  11 cgagtgagaagaaatgtatgtgtgatttgatacaagtttacatttattcaatcaaaata 69  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10597908 cgagtgacaagaaatgtatgtgtgatttgatacaag-ttacatttattcaatcaaaata 10597851  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 113946 - 114015
Alignment:
Q  197 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaat 266  Q
    ||||||||||||| |||||||| |||||||||||||||| |  ||||| || ||||||||||||||||||    
T  113946 cattcaaacttttttgagaaactattgcacaaatatgtcttatgatttttaatttgatcatgcaagcaat 114015  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 23689306 - 23689244
Alignment:
Q  197 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgc 259  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||| |||||    
T  23689306 cattcaaacttttctgataaactattgcacaaatatatcataggatttcaagtttgaacatgc 23689244  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 270
Target Start/End: Original strand, 24750424 - 24750524
Alignment:
Q  171 acattcaaacttaagaacaa-gacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt-ctagtttgatcatgcaagcaataa 268  Q
    ||||||||||||| |||||| || || |||||||| ||||||||||||  |||||||||||||||||| ||||||  |||||||||| || ||| |||||    
T  24750424 acattcaaacttatgaacaatgatgaacattcaaagttttctgagaaat-attgcacaaatatgtcataggatttagtagtttgatcttgaaagtaataa 24750522  T
Q  269 at 270  Q
    ||    
T  24750523 at 24750524  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 56367953 - 56368071
Alignment:
Q  145 atgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt 244  Q
    |||||| ||||||||||||| |||| ||||||||||||| |||||  |  |  |||||||| ||||||||||||  |||||  ||||||||||  |||||    
T  56367953 atgagatagttatcttcatcttttttacattcaaacttatgaacaccataaatattcaaacctttctgagaaacatttgca-taatatgtcataagattt 56368051  T
Q  245 ctagtttgatcatgcaagca 264  Q
    |||||||  |||| ||||||    
T  56368052 ctagtttattcatacaagca 56368071  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 10398774 - 10398655
Alignment:
Q  148 agacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaac-ttttctgagaaaccattgcacaaatatgtcattggatttct 246  Q
    ||||| ||||||| ||| |||| ||||||||||| | |||||  | ||  |||||||| |||| ||| ||||  |||||||| |||||| | || |||||    
T  10398774 agacaattatcttgatcttttttacattcaaactcaggaacaccatgaatattcaaacattttttgaaaaacatttgcacaa-tatgtcctagggtttct 10398676  T
Q  247 agtttgatcatgcaagcaata 267  Q
    ||||||||| |||||||||||    
T  10398675 agtttgatcctgcaagcaata 10398655  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 18104143 - 18104248
Alignment:
Q  165 cttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt-ctagtttgatcatgcaagc 263  Q
    ||||| |||||||| | || ||||| || ||  |||||||||||||||||||| |||||||||| |||||| |  |||||  |||||||||||||||||     
T  18104143 cttttaacattcaagcctatgaacatgatgaaaattcaaacttttctgagaaa-cattgcacaattatgtcctacgatttaatagtttgatcatgcaagt 18104241  T
Q  264 aataaat 270  Q
    |||||||    
T  18104242 aataaat 18104248  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 18439574 - 18439643
Alignment:
Q  197 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaat 266  Q
    ||||||||||||| |||||||  |||||||||||| ||| |   ||||||||||||||| ||||||||||    
T  18439574 cattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaat 18439643  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 18450432 - 18450501
Alignment:
Q  197 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaat 266  Q
    ||||||||||||| |||||||  |||||||||||| ||| |   ||||||||||||||| ||||||||||    
T  18450432 cattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaat 18450501  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 31483318 - 31483284
Alignment:
Q  231 atgtcattggatttctagtttgatcatgcaagcaa 265  Q
    ||||||| |||||||||||||||||||||||||||    
T  31483318 atgtcataggatttctagtttgatcatgcaagcaa 31483284  T

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Target: scaffold0084 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 30989 - 31017
Alignment:
Q  239 ggatttctagtttgatcatgcaagcaata 267  Q
    |||||||||||||||||||||||||||||    
T  30989 ggatttctagtttgatcatgcaagcaata 31017  T

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