View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14570_low_1 (Length: 939)
Name: NF14570_low_1
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14570_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 304 - 918
Target Start/End: Complemental strand, 32230940 - 32230331
Alignment:
| Q |
304 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtattttctcaatgtttgttacttttagaaaatcaaaagtaagacataagtataaag |
403 |
Q |
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| T |
32230940 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtatattctcaatgtttgttacttttagaaaatcaaaagtaagacacaagtataaag |
32230841 |
T |
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| Q |
404 |
acaaataaacatatgcggtatcacattccacgtatgtattttgatgttccactaacacaaactcaaggttatattttgattgatggaatgaagtagaata |
503 |
Q |
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| T |
32230840 |
ataaataaacatatgcggtatcacattccaagtatgtattttaatgttccaataacacaaactcaaggttatattttgattgatggaatgaagtagaata |
32230741 |
T |
|
| Q |
504 |
agatagtgttatattgttttaatagtctttaaaagagtggaatagaaaggaattcaatggcatccattcaatcacatttattcacattttgcatcccctt |
603 |
Q |
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| T |
32230740 |
agatagtgttatattgttttaatagtctttaaaagagtgaaatagaaaggaattcgatggcatccattcaatcacatttattcacattttgcatcccctt |
32230641 |
T |
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| Q |
604 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
703 |
Q |
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| T |
32230640 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
32230541 |
T |
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| Q |
704 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
803 |
Q |
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| T |
32230540 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
32230441 |
T |
|
| Q |
804 |
acaaaacgtacatatataacatgcagagataaataaacactttagtcatcttgtaaatttaatttccgagatagaaatcttgttgattccccagtttgga |
903 |
Q |
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| T |
32230440 |
acaaa----acatatataacatgcagagataaataaacac-ttagtcatcttgtaaatttaatttccgagatagaaatcttgttgattccccagtttgga |
32230346 |
T |
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| Q |
904 |
aatattcggtggatg |
918 |
Q |
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|||||| |||||||| |
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| T |
32230345 |
aatatttggtggatg |
32230331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 32231102 - 32230981
Alignment:
| Q |
177 |
aggtatattattctcaacaaattgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattgg |
276 |
Q |
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| T |
32231102 |
aggtatattattctcaacaaactgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattgg |
32231003 |
T |
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| Q |
277 |
tgatcatactttctataatatg |
298 |
Q |
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| T |
32231002 |
tgatcatactttctataatatg |
32230981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 32231264 - 32231226
Alignment:
| Q |
15 |
catctctataaataaaactcagtcgtgtaatttgaaaac |
53 |
Q |
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| T |
32231264 |
catctctatatataaaactcagttgtgtaatttgaaaac |
32231226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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