View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14570_low_4 (Length: 375)
Name: NF14570_low_4
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14570_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 43714686 - 43714336
Alignment:
| Q |
1 |
atctcatatccctttcttctcactgccccccaccgccaccactctctgcatcaataatcacaacatcatcactctcccttcttccaatcatcgccgcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43714686 |
atctcatatccctttcttctcactgccccccaccgtcaccactctctgcatcaataatcacaacatcatcactctcccttcttcctatcatcgccgcctc |
43714587 |
T |
|
| Q |
101 |
catcacaaaccataccatcgtttgtcggtgccgtctcaaacccttttgtcatatgtcaattcagaagtgtgataaagaatttaatttcaataagtagcgg |
200 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714586 |
catcacaaatcatatcatcgtttgtcggtgccgtc-caaacccttttgtcatatgtcaattcagaagtgtgataaagaatttaatttcaataagtagcgg |
43714488 |
T |
|
| Q |
201 |
atgaatcaaaattattttaatcagcttgaaatcaattccgtcggcaaagggcggtggtttagtggttgtggctgccattggaggagaagatatgatatta |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714487 |
atgaatcgaaattattttaatcagcttgaaatcaattccggcggcaaagggcggtggtttagtggttgtggctgccattggaggagaagatatgatatta |
43714388 |
T |
|
| Q |
301 |
cagtaaaagggaatacaaacgtgattgaagaaagagaaaatagcatttgtta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714387 |
cagtaaaagggaatacaaacgtgattgaagaaagagaaaatagcatttgtta |
43714336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University