View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14570_low_5 (Length: 359)

Name: NF14570_low_5
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14570_low_5
NF14570_low_5
[»] chr3 (12 HSPs)
chr3 (1-348)||(679239-679587)
chr3 (102-348)||(751046-751290)
chr3 (1-104)||(747402-747505)
chr3 (2-97)||(7324687-7324782)
chr3 (104-264)||(2632504-2632659)
chr3 (25-97)||(9566094-9566166)
chr3 (44-100)||(9594898-9594954)
chr3 (12-97)||(2491786-2491871)
chr3 (25-89)||(754888-754952)
chr3 (1-97)||(9562235-9562331)
chr3 (1-88)||(7443269-7443356)
chr3 (48-97)||(2476377-2476426)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 679587 - 679239
Alignment:
Q  1 cattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679587 cattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 679488  T
Q  101 tatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679487 tatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtat 679388  T
Q  201 catatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca-nnnnnnnn 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             
T  679387 catatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcattttttttt 679288  T
Q  300 nnctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 348  Q
      |||||||||||| ||||||||||||||||||||||||||||||||||    
T  679287 ttctttctagttctgagaattagaagaatgctgcgtatatttgagtatt 679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 348
Target Start/End: Complemental strand, 751290 - 751046
Alignment:
Q  102 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  202 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  302 ctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 348  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  751091 -tttctagttcttagaattagaagaatgctgcgtatatttgagtatt 751046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 747505 - 747402
Alignment:
Q  1 cattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 100  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  747505 cattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacat 747406  T
Q  101 tatt 104  Q
    ||||    
T  747405 tatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 7324782 - 7324687
Alignment:
Q  2 attgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 97  Q
    ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  7324782 attgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaagaatagaggacatccca 7324687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  104 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 199  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  200 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 264  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 9566166 - 9566094
Alignment:
Q  25 tgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 97  Q
    ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  9566166 tgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaatagaggacatccca 9566094  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 9594954 - 9594898
Alignment:
Q  44 gtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 100  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  9594954 gtttttgtttatactttggggactgattattggacaagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 2491786 - 2491871
Alignment:
Q  12 ataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 97  Q
    |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||||||||  ||| |||||||    
T  2491786 ataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaagaatcaaggacatccca 2491871  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 754952 - 754888
Alignment:
Q  25 tgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 89  Q
    ||||||| || |||| || ||||||||| |||| ||||||  |||||||||||||||||||||||    
T  754952 tgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggacaagaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9562331 - 9562235
Alignment:
Q  1 cattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 97  Q
    |||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  |||||||||| |||||||    
T  9562331 cattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagaggacatccca 9562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7443356 - 7443269
Alignment:
Q  1 cattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagag 88  Q
    |||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  ||||||||||| ||||||||||    
T  7443356 cattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaatagag 7443269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 2476377 - 2476426
Alignment:
Q  48 gtgttaatactttgggggatgattattggacaagaatagagggcatccca 97  Q
    |||||||||||||||||  ||||||||||||||||||  ||| |||||||    
T  2476377 gtgttaatactttggggactgattattggacaagaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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