View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14570_low_7 (Length: 325)
Name: NF14570_low_7
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14570_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 9920027 - 9920146
Alignment:
| Q |
80 |
ataaaataatagagagtaatgatatttaaaaagagtgattaacacatannnnnnnnnnnnnnnnnnnnnaactttgtaaaagattgaatttgatatctaa |
179 |
Q |
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| T |
9920027 |
ataaaataatagagagtaatgatatttaaaaagagtgattaacacatattttaatatttttaattttttaactttgtaaaagattgaatttgatatctaa |
9920126 |
T |
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| Q |
180 |
tttcattgtagatctcactg |
199 |
Q |
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| T |
9920127 |
tttcattgtagatctcactg |
9920146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9919914 - 9919968
Alignment:
| Q |
7 |
catctaacaacaaccgttcggcacactcaagctctggtaagcactctaaacaatt |
61 |
Q |
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| T |
9919914 |
catctaacaacaaccgttcggcacactcaagctctggtaagcactctaaacaatt |
9919968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 316
Target Start/End: Original strand, 9920234 - 9920264
Alignment:
| Q |
286 |
gcctcggaaagaaagatctaacttgggatat |
316 |
Q |
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| T |
9920234 |
gcctcggaaagaaagatctaacttgggatat |
9920264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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