View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14570_low_8 (Length: 301)

Name: NF14570_low_8
Description: NF14570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14570_low_8
NF14570_low_8
[»] chr2 (2 HSPs)
chr2 (11-279)||(26661413-26661681)
chr2 (106-236)||(6049912-6050043)
[»] chr6 (2 HSPs)
chr6 (11-279)||(21481331-21481599)
chr6 (108-244)||(19701161-19701298)
[»] chr7 (2 HSPs)
chr7 (32-230)||(13331531-13331727)
chr7 (32-230)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (32-230)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (77-244)||(10637619-10637786)
chr8 (77-244)||(32717808-32717975)
[»] chr1 (2 HSPs)
chr1 (77-244)||(22893774-22893941)
chr1 (106-236)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (49-230)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (108-244)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (155-236)||(13893697-13893778)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 26661413 - 26661681
Alignment:
Q  11 tccaagaatatacctcttctacccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacc 110  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26661413 tccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 26661512  T
Q  111 catgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattact 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661513 catgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattact 26661612  T
Q  211 caacatagatttggtgattgatatcaattctctgnnnnnnngtctgctgtttgttgcttattgctttgt 279  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  26661613 caacatagatttggtgattgatatcaattctctgtttttttgtctgctgtttgttgcttattgctttgt 26661681  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  106 aaacccatgatctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttcc 204  Q
    |||||||| ||||||||| ||| |||||||| ||||| | || |||| | |||||||||||||| ||||||||| |||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  205 attactcaacatagatttggtgattgatatca 236  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

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Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 21481331 - 21481599
Alignment:
Q  11 tccaagaatatacctcttctacccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacc 110  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21481331 tccaacaaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 21481430  T
Q  111 catgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattact 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  21481431 catgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattact 21481530  T
Q  211 caacatagatttggtgattgatatcaattctctgnnnnnnngtctgctgtttgttgcttattgctttgt 279  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  21481531 caacatagatttggtgattgatatcaattctctgtttttttgtctgctgtttgttgcttattgctttgt 21481599  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 19701161 - 19701298
Alignment:
Q  108 acccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccat 206  Q
    ||||||||||||||| |||| |||||||| ||||| | ||| ||||| ||||||||| |||| ||||||||| |||||||||||||  ||||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccat 19701260  T
Q  207 tactcaacatagatttggtgattgatatcaattctctg 244  Q
    ||||||||||||||||| ||||| |||||| |||||||    
T  19701261 tactcaacatagatttgttgatttatatcatttctctg 19701298  T

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Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  32 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 131  Q
    |||||||||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  132 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 230  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  32 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 131  Q
    |||||| ||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  132 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 230  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  32 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 131  Q
    |||||| ||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  132 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 230  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

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Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 10637619 - 10637786
Alignment:
Q  77 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 175  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  10637619 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 10637717  T
Q  176 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 244  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10637718 gtatcatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 10637786  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 32717975 - 32717808
Alignment:
Q  77 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 175  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  32717975 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 32717877  T
Q  176 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 244  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  32717876 gtaccatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 32717808  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 22893774 - 22893941
Alignment:
Q  77 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 175  Q
    |||||||||||||| |||| || |||| |||||||||||||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  22893774 ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 22893872  T
Q  176 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 244  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  22893873 gtaacatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  106 aaacccatgatctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttcc 204  Q
    |||||||| ||||||||| ||| |||||||| ||||| | || |||| | |||||||||||||| ||||||||| |||| |||| | |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttcc 44306227  T
Q  205 attactcaacatagatttggtgattgatatca 236  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  49 attctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactacttgccaattgg 148  Q
    ||||||||||| |||||||  |||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||| |||| |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  149 gtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 230  Q
    | ||||||||||||| |||| ||||| ||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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Target: scaffold0586 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 9594 - 9731
Alignment:
Q  108 acccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccat 206  Q
    ||||||||||||||| |||| |||||||| ||||    ||| ||||| |||||||||||||| ||||||||| |||||||||||||  ||||||||||||    
T  9594 acccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 9693  T
Q  207 tactcaacatagatttggtgattgatatcaattctctg 244  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  9694 tactcaacatagatttggtgatttatatcatttctctg 9731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 13893778 - 13893697
Alignment:
Q  155 gatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 236  Q
    |||||||||||||| ||||||||| |||| |||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  13893778 gatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatca 13893697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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