View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14571_high_1 (Length: 340)
Name: NF14571_high_1
Description: NF14571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14571_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 54267946 - 54268245
Alignment:
| Q |
13 |
gcataggcatagacatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54267946 |
gcataggcataggcatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
54268045 |
T |
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| Q |
113 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268046 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
54268145 |
T |
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| Q |
213 |
cctctactgttaatagttgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcaccatccatctccatctcca |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268146 |
cctctactgttaataattgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcaccatccatctccatctcca |
54268245 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 21132231 - 21132193
Alignment:
| Q |
68 |
agtagttaccgcaggtcagtatacggaagtacagtacat |
106 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| |
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| T |
21132231 |
agtagttaccgcaggtcagtataccgaagtacaatacat |
21132193 |
T |
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