View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14571_high_2 (Length: 299)

Name: NF14571_high_2
Description: NF14571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14571_high_2
NF14571_high_2
[»] chr4 (1 HSPs)
chr4 (16-299)||(37304249-37304540)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 37304540 - 37304249
Alignment:
Q  16 cttctgtcagttccaaagaatttccagccagaagtgccaccagattgcgttatgnnnnnnnactggtcccatatatatcatatttctgtcaaattataca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  37304540 cttctgtcagttccaaagaatttccagccagaagtgccaccagattgcgttatgtttttttactggtcccatatatatcatatttctgtcaaattataca 37304441  T
Q  116 tacatatttttt-------gtaacataaa-gctaaaattctaaacatgtggacgaaccaaaggcccagacacatagggagggctcttaaatgttggacgt 207  Q
    ||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37304440 tacatattttttattttttgtaacataaaagctaaaattctaaacatgtggacgaaccaaaggcccagacacatagggagggctcttaaatgttggacgt 37304341  T
Q  208 gaacagtagttaaagttggtcgagtcctagttaatggatcatgtatggtatgaatagtcccccaaagacagagtccacactgacaaagtcac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37304340 gaacagtagttaaagttggtcgagtcctagttaatggatcatgtatggtatgaatagtcccccaaagacagagtccacactgacaaagtcac 37304249  T

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