View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14571_high_3 (Length: 243)
Name: NF14571_high_3
Description: NF14571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14571_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 39593153 - 39593378
Alignment:
| Q |
17 |
aagatgtgttcagtgttgagcacacgtggtttcattcaattattctgtttttcacattgaaggcatttcaggtgttctcattgatacatgtcggtgtctc |
116 |
Q |
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| T |
39593153 |
aagatgtgttcggtgttgaacacaagtggtttcattcaattattctgtttttcacattgaaggcatttcaggtgttctcattgatacatatcggtgtctc |
39593252 |
T |
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| Q |
117 |
tgacaccaacacgacacttatatatgtggcaacattcaattgtttaattttttaaaattattaattaccggtgtcgacgtgtaaatgtcatgtcatacga |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39593253 |
tgacaccaacacgacacttatatatgtggctacattcaattaattaa-tttttaaaattattaattaccggtgtcgacgtgtaaatgtcatgtcatacga |
39593351 |
T |
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| Q |
217 |
attaatattcatttctttattacctgc |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39593352 |
attaatattcatttctttattacctgc |
39593378 |
T |
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