View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14571_low_2 (Length: 409)
Name: NF14571_low_2
Description: NF14571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14571_low_2 |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 7871612 - 7871242
Alignment:
| Q |
13 |
gagatgaaactaacgggattcaatgtgtggaaacgcagactaagatgcaactcctcaacacaatgctgttttgcggcttttagccattttgtcacattaa |
112 |
Q |
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| T |
7871612 |
gagatgaaaataacgggattcaatgtgtggaaacgcagactaagatgtaactcctcaacacaatgctgttttgcagcttttagccattttgtcacattaa |
7871513 |
T |
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| Q |
113 |
acccggtattggggtgtccatagaaaaagtttaggtgaaatgatttgaggggttggttggttgaaggacgagagagcatgaga-----gtgtcaacaaaa |
207 |
Q |
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| T |
7871512 |
acacggtatcggggtgtccatagaaaaagtttaggtgaaatgatttgaggggttgattggttgaaggacgagagagcatgagatgagagtgtcaacaaaa |
7871413 |
T |
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| Q |
208 |
cgacaaaagcaatcaaaggtttcatagtcttgcttggtttcatatttgttgtcgacttcatagtcaaaggcgagaacagggagtgaatagcatagtggga |
307 |
Q |
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| T |
7871412 |
agacaaaagcaatcaaaggtttcatagtcttgcttggtttcatattttttgtcgacttcatagtcaaaggcgagaacagggagtgaatagcatagtggga |
7871313 |
T |
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| Q |
308 |
tccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac |
378 |
Q |
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| T |
7871312 |
tccaccgtttggaaagaagggttgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac |
7871242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 372
Target Start/End: Original strand, 7806761 - 7806851
Alignment:
| Q |
282 |
aacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaa |
372 |
Q |
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| T |
7806761 |
aacagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaa |
7806851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 377
Target Start/End: Complemental strand, 7814116 - 7814018
Alignment:
| Q |
279 |
gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaa |
377 |
Q |
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| T |
7814116 |
gagagcagggagtgaatagcagagtccggtccatcgcttggaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaa |
7814018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 15398316 - 15398225
Alignment:
| Q |
279 |
gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgt |
370 |
Q |
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| T |
15398316 |
gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgt |
15398225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 15410103 - 15410012
Alignment:
| Q |
279 |
gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgt |
370 |
Q |
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| T |
15410103 |
gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgt |
15410012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 7860174 - 7860097
Alignment:
| Q |
140 |
agtttaggtgaaatgatttgaggggttggttggttgaaggacgagagagcatgagagtgtcaacaaaacgacaaaagc |
217 |
Q |
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| T |
7860174 |
agtttaggcgaaacgatttgagaggttggttggttgaaagaggagagaacatgaaattgtcgacaaaacgacagaagc |
7860097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 7860307 - 7860229
Alignment:
| Q |
13 |
gagatgaaactaacgggattcaatgtgtggaaacgcagactaagatgcaactcctcaacacaatgctgttttgcggctt |
91 |
Q |
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| T |
7860307 |
gagatgaaaataatgggattcaatgtttggaaatacagatttagatgtaattcctcaacatgacgctgttttgcggctt |
7860229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 19317660 - 19317746
Alignment:
| Q |
286 |
gggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaa |
372 |
Q |
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| T |
19317660 |
gggagtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttttgttgggagaaaagagagaatgtaa |
19317746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 411 - 480
Alignment:
| Q |
279 |
gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttg |
348 |
Q |
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| T |
411 |
gagaatagtgagtgagtggcaaagtgggatccaccgtttcgaaagaacggtggtagtgaaagcgattttg |
480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 24005974 - 24006029
Alignment:
| Q |
315 |
tttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgt |
370 |
Q |
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| T |
24005974 |
tttggagagaagggttgtggtgaaagcaagtttggttggaagaaaagagagaatgt |
24006029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 49178564 - 49178500
Alignment:
| Q |
301 |
agtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagag |
365 |
Q |
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| T |
49178564 |
agtggggtccatcttttggagagaacggtggtggtgaaagcgagttttgttgggagaaaagagag |
49178500 |
T |
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