View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14571_low_5 (Length: 252)
Name: NF14571_low_5
Description: NF14571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14571_low_5 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 33441466 - 33441700
Alignment:
| Q |
18 |
atattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcacctctagctagctctagcaattcattgtatatggtttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33441466 |
atattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcagctctagctagctctagcaattcattgtatatggtttca |
33441565 |
T |
|
| Q |
118 |
ccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatg |
217 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33441566 |
ccatataaacaatttcagagtaagttgaagtgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatg |
33441665 |
T |
|
| Q |
218 |
atattacattcaccaatgtaaacaaactaaataaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33441666 |
atattacattcaccaatgtaaacaaactaaataaa |
33441700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 33451791 - 33451920
Alignment:
| Q |
123 |
taaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatgatatt |
222 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33451791 |
taaacaatttcagagtaagttgaactgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatatt |
33451890 |
T |
|
| Q |
223 |
acattcaccaatgtaaacaaactaaataaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33451891 |
acattcaccaatgtaaacaaactaaataaa |
33451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1579 - 1400
Alignment:
| Q |
18 |
atattgcaataattttccacataaacccttaattc--acgacatcaagctactctctacttcacctctagctagctctagcaattcattgtatatggttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
1579 |
atattgcaataattttccacataaacccctagacctaacaacatcaagctactgtctacttcacctctagctagctctaacacttcattgtatatggttt |
1480 |
T |
|
| Q |
116 |
caccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttat |
197 |
Q |
| |
|
|||||||||| ||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1479 |
caccatataagcaa-ttcag-gtaggataaactgacatattatccctcagcaaataatctcaatgcctctcatggcttttat |
1400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University