View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_12 (Length: 501)
Name: NF14572_high_12
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 34673857 - 34673507
Alignment:
| Q |
1 |
taagagcgacatctagcattttccataatatctcatatcccatcatatgcatgcataaggcgcctagttttttagttgagcctacttttgaatggatcaa |
100 |
Q |
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| T |
34673857 |
taagagcgacatctagcatttttcataatatctcatatcccatcatatgcat----aaggcgcctagttttttagttgaacctaattttgaatggatcaa |
34673762 |
T |
|
| Q |
101 |
catgagactgagattggtagtgttggtaacatattctcaaacatatatttctaaatatactatattctattgattgaaatttaaatcggattcattaaat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34673761 |
catgagactgagattggtagtgttagtaacatattctcaaacatacatttctaaatatactacattctattgattgaaatttaaatcggattcattaaat |
34673662 |
T |
|
| Q |
201 |
ttaatgatacaactcagcaacgagccaacgacgaacccaaatattgtaaatattacacgcaatgcatatataaatttatatcaataaatacataagtagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34673661 |
ttaatgatacaactcagcaacgagccaacgacgaacccaaatattgtgagtattacactcaatgcatatataaatttatatcaataaatacataagtagt |
34673562 |
T |
|
| Q |
301 |
caaataatattttaaacattcatctttcgaataatacaaatatgagaggtagacc |
355 |
Q |
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| T |
34673561 |
caaataatattttaaacattcatctttcgaataatacaaatatgagaggtagacc |
34673507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 34673457 - 34673380
Alignment:
| Q |
406 |
aacttgatgttataatgcggacctttgtcaaattttatcctctctgtgtgcataatttcatccttagtgaggccatgg |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34673457 |
aacttgatgttataatgcggacctttgtcaaattttatcctctctgtatgcataatttcatccttagtgaggccatgg |
34673380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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