View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_13 (Length: 500)
Name: NF14572_high_13
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 485
Target Start/End: Complemental strand, 8453127 - 8452677
Alignment:
| Q |
29 |
tctttcatgcaggttcgttctacttctggtgtacatttgagcaaatcccttcattccaacttacaaaaagaaaccagtactgatattccaagcaacatga |
128 |
Q |
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| T |
8453127 |
tctttcatgcaggttcgttctacttctggtgtacattcgagcaaatcctttcattccaacttacaaaaagaaaccattactgatattccaagcaacatga |
8453028 |
T |
|
| Q |
129 |
ggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatattatggatttatca |
228 |
Q |
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| T |
8453027 |
ggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatat---ggatttatca |
8452931 |
T |
|
| Q |
229 |
gactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatctt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452930 |
gactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatctt |
8452831 |
T |
|
| Q |
329 |
ggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgctgtatttcctattgttccttagt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8452830 |
ggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgttgtatttcctattgttccttagt |
8452731 |
T |
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| Q |
429 |
ttaca-ttttnnnnnnntgataatttaattaatatccccctcttcatccttgcctatg |
485 |
Q |
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||||| |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
8452730 |
ttacatttttccccccctgataat----ttaatatccccctcttcatccttgcctatg |
8452677 |
T |
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