View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_15 (Length: 494)
Name: NF14572_high_15
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Complemental strand, 13348837 - 13348366
Alignment:
| Q |
16 |
attctgaatgcgtataatgaatatatgccatcattcgacaggttggaccacgtctaaacaaagacagggaaaggttcccaccaaacaatctccttcttat |
115 |
Q |
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| T |
13348837 |
attctgaatgcgtataatgaatatatgccatcattcgacaggttggaccacgtctaaacaaagacagggaaaggttcccaccaaacaatctccttcttat |
13348738 |
T |
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| Q |
116 |
gttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttactcagttggcttggatgcttcattggctgtcttgaacaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13348737 |
gttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttactcagttggcttggatgcttcattggctgtcttgaacaca |
13348638 |
T |
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| Q |
216 |
catgcttgcactgctactagcttgcttacttgggtcttccttgatgtcattttcttcagaaagccttctgttattggtgctgttcaaggcatgattactg |
315 |
Q |
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| T |
13348637 |
catgcttgcactgctactagcttgcttacttgggtcttccttgatgtcattttcttcagaaagccttctgttattggtgctgttcaaggcatgattactg |
13348538 |
T |
|
| Q |
316 |
gtttggtttgcattacccctgctgcaggtttgtaatatttcattcattcttcaagatannnnnnncccctttaaatccaatatatacgaggattattttg |
415 |
Q |
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| T |
13348537 |
gtttggtttgcattacccctgctgcaggtttgtaatatttcattcattcttcaagatatttttttcccctttaaatccaatatttacgaggattattttg |
13348438 |
T |
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| Q |
416 |
tacttgttttatattagttgatattttttcacttataactaagagcgcttggatgatatggttcatctctct |
487 |
Q |
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| T |
13348437 |
tacttgttttatattagttaatattttgtcacttataactaagagcgcttggataagatggttcatgtctct |
13348366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 39725594 - 39725518
Alignment:
| Q |
255 |
cttgatgtcattttcttcagaaagccttctgttattggtgctgttcaaggcatgattactggtttggtttgcattac |
331 |
Q |
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| T |
39725594 |
cttgatgtcatattcttcaaaaaaccatcagttattggagctgttcaaggcatgattactggtcttgtttgcattac |
39725518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 39725771 - 39725671
Alignment:
| Q |
78 |
gacagggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttact |
177 |
Q |
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| T |
39725771 |
gacagggagagattcccaccaaacaatgtgttactaacgttggcaggggcagggttactatggatgggatgggcaggtttcaacggtggagatccctact |
39725672 |
T |
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| Q |
178 |
c |
178 |
Q |
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| T |
39725671 |
c |
39725671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 5624660 - 5624573
Alignment:
| Q |
81 |
agggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggag |
168 |
Q |
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| T |
5624660 |
agggagagattcccaccaaacaatgtattgcttatgctagcaggagcaggattgttatggatgggttggtcagggttcaatggtggag |
5624573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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