View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_16 (Length: 471)
Name: NF14572_high_16
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 51211728 - 51211276
Alignment:
| Q |
1 |
aatgaaatatataaatgaaacttccaatagcaaagatttcagtctgaggtttaacagcaaataccctttttatggtaccaaaaactcatgaaagaaagag |
100 |
Q |
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| T |
51211728 |
aatgaaatatataaatgaaacttccaatagcaaagatttcagtctgaggtttaacagcaaataccctttttatggtaccaaaaactcatgaaagaaagag |
51211629 |
T |
|
| Q |
101 |
cggattgatatacgtttttgcttagcaataaaaatagcactgcctaaccagtaccaaacgtggccataagtcctcaagtaaatttaaaatagggatatca |
200 |
Q |
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| T |
51211628 |
cggattgatatacgtttttgcttagcaataataatagcactgcctaaccagtaccaaacgtggacacaagtcctcaagtaaatttaaaatagggatatca |
51211529 |
T |
|
| Q |
201 |
acaatgcataatgctagtaatcaagggtgtgtcgaaaagagtgtgttcttagcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211528 |
gcaatgcataatgctagtaatcaagggtgtgtcgaaaagagtgtgttcttagcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgt |
51211429 |
T |
|
| Q |
301 |
gggacaggtttcttatgcatggggctaataatgccaaaaggataaaattgcagattgcccgctcaacaatttaatagttttcaattcattgataatgtga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211428 |
gggacaggtttcttatgcatggggctaataatgccaaaaggataaaattgcagattgcccgctcaacaatttaatagttttcaattcattgataatgtga |
51211329 |
T |
|
| Q |
401 |
taacttggaatatattgatcgtacaacatagatgtaagcatgtcagcatactc |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51211328 |
taacttggaatatattgatcgtacaacatagatgtaagcatgtcagcatactc |
51211276 |
T |
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