View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_20 (Length: 453)
Name: NF14572_high_20
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 52380023 - 52380386
Alignment:
| Q |
23 |
atacctctaaatccaggggatattgcttattagagtggatctagtaccacactaaatttgcactgtatatgtatgtatgaccccttaattaatttcaatt |
122 |
Q |
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| T |
52380023 |
atacctctaaatccaagggatattgcttattagagtggatctagtaccacactaaatttgcactgtatatgtatgtatgaccccttaattaattt-aatt |
52380121 |
T |
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| Q |
123 |
atgtgaggtatcatttaatgttgcgtagtctataaaacattaaattaataataatcactaatcaacaacattcatagatagttgaaattcttaagaattt |
222 |
Q |
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| T |
52380122 |
atgtgaggtatcatttaatgttgcgtagtgtataaaacattaaattaataataatcactaatcaacaacattcatagatagttgaaattcttaagaattt |
52380221 |
T |
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| Q |
223 |
tacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacataaggcaaagaaagatattatgcgtcctttc |
322 |
Q |
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| T |
52380222 |
tacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacatgaggcaaagaaagatattatgcgtcctttc |
52380321 |
T |
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| Q |
323 |
attcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
387 |
Q |
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| T |
52380322 |
attcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
52380386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 52380400 - 52380438
Alignment:
| Q |
408 |
ctacttactcttttttctcgatcacatcattatattcat |
446 |
Q |
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| T |
52380400 |
ctacttactcttttttctcgatcacatcattatattcat |
52380438 |
T |
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