View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_21 (Length: 449)
Name: NF14572_high_21
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 21489374 - 21488952
Alignment:
| Q |
11 |
tagataatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21489374 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataat |
21489275 |
T |
|
| Q |
111 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21489274 |
tgggatcaaacactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttgaacccac |
21489175 |
T |
|
| Q |
211 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21489174 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagatgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
21489075 |
T |
|
| Q |
311 |
gtaacgaagctagcgacatgtccagtagtactatcccaaatattcactggatttgaatacaacacccgtccagtactttgtttagaaaggttggttagga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21489074 |
gtaacgaagctagcgacatgtccagtagtactatcccaaatagtcactggatttgaatacaacacccgtccagtactttgtttagaaaggttggttaggg |
21488975 |
T |
|
| Q |
411 |
caattaccccatttggtaaaatc |
433 |
Q |
| |
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| T |
21488974 |
ccattaccccatttggtaaaatc |
21488952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 21483023 - 21482664
Alignment:
| Q |
17 |
atacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataattgggat |
116 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |
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| T |
21483023 |
atacttactttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgggat |
21482924 |
T |
|
| Q |
117 |
caaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccacagagtt |
216 |
Q |
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|| || | |||||||| | |||||||| ||||||||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||||| |
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| T |
21482923 |
catac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgaacctccagagtt |
21482830 |
T |
|
| Q |
217 |
gtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaagtaacg |
316 |
Q |
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| ||||||| ||||| |||||||||||||||||||||| || ||||||||||| |||||| ||||| |||||||||||||||| ||||||| ||| |
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| T |
21482829 |
gggaggaatgacggtatcttgtggtgcaagaaagaagatgactccatcggctttattataatcttgaatgtcctcaaccgtgaaggagaaggaagcgacg |
21482730 |
T |
|
| Q |
317 |
aagctagcgacatgtccagtagtactatcccaaatattcactggatttgaatacaacacccgtcca |
382 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21482729 |
aagctagcaacatgtccagtagtactatcccaaataggcactggatttgaatacaacacccgtcca |
21482664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 21493181 - 21492765
Alignment:
| Q |
11 |
tagataatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
110 |
Q |
| |
|
||||| ||| ||||||| || ||||||||||| ||| | ||||||| |||||| ||| ||| |||| ||||||||||||||||||||||||| ||| | |
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| T |
21493181 |
tagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatcaattccaatatgtggatact |
21493082 |
T |
|
| Q |
111 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
210 |
Q |
| |
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|||||||| || | |||||||| | |||||||| ||||||||||||||||||||||| |||| | |||||||||||||||| | | ||| | |
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| T |
21493081 |
tgggatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccgagatatttacctcc |
21492988 |
T |
|
| Q |
211 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
310 |
Q |
| |
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||||||| ||||||| |||||||| |||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||| |||||| |
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| T |
21492987 |
agagttgggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggctggcatataaccttgataatcctcaacgacgaaggagaaggaa |
21492888 |
T |
|
| Q |
311 |
gtaacgaagctagcgacatgtccagtagtactatcccaaatattcactggatttgaatacaacacccgtccagtactttgtttagaaaggttggttagga |
410 |
Q |
| |
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| | ||||||||| |||||||| ||||||| |||||||||| ||| | ||||||||||||||||||||||||| | | |||| ||||||| || |
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| T |
21492887 |
gcgatgaagctagcaacatgtccggtagtacgatcccaaataggcaccgaatttgaatacaacacccgtccagtattagggttagttgggttggtgagtg |
21492788 |
T |
|
| Q |
411 |
caattaccccatttggtaaaatc |
433 |
Q |
| |
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| ||||||||||||||||||||| |
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|
| T |
21492787 |
ccattaccccatttggtaaaatc |
21492765 |
T |
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