View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_high_22 (Length: 443)

Name: NF14572_high_22
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_high_22
NF14572_high_22
[»] chr1 (24 HSPs)
chr1 (162-426)||(213340-213604)
chr1 (1-132)||(213585-213718)
chr1 (154-241)||(10324926-10325013)
chr1 (167-244)||(1514366-1514443)
chr1 (154-244)||(48548999-48549087)
chr1 (154-206)||(33693031-33693083)
chr1 (168-231)||(6021828-6021891)
chr1 (154-244)||(3016172-3016262)
chr1 (154-244)||(7524123-7524213)
chr1 (167-241)||(11049273-11049347)
chr1 (154-244)||(28083873-28083963)
chr1 (154-227)||(7790644-7790717)
chr1 (152-235)||(52339722-52339805)
chr1 (166-233)||(24587932-24588001)
chr1 (167-228)||(28287337-28287398)
chr1 (164-209)||(29759632-29759677)
chr1 (154-205)||(3515828-3515879)
chr1 (173-219)||(17284125-17284171)
chr1 (167-244)||(30557527-30557602)
chr1 (155-197)||(31362237-31362279)
chr1 (251-308)||(3515920-3515977)
chr1 (164-229)||(20720836-20720901)
chr1 (187-244)||(52263632-52263689)
chr1 (161-225)||(9939732-9939796)
[»] chr8 (15 HSPs)
chr8 (167-244)||(26100131-26100208)
chr8 (152-230)||(13384653-13384731)
chr8 (167-244)||(32927915-32927992)
chr8 (152-244)||(16972049-16972141)
chr8 (177-244)||(35495293-35495360)
chr8 (167-244)||(35495013-35495090)
chr8 (165-234)||(7720199-7720272)
chr8 (167-304)||(4662826-4662965)
chr8 (154-229)||(38868508-38868583)
chr8 (186-244)||(5859048-5859106)
chr8 (170-244)||(32994227-32994301)
chr8 (271-304)||(18355768-18355801)
chr8 (170-244)||(32767413-32767489)
chr8 (154-227)||(38203296-38203369)
chr8 (264-304)||(4336575-4336615)
[»] chr2 (16 HSPs)
chr2 (154-243)||(42982554-42982643)
chr2 (154-230)||(42740987-42741063)
chr2 (154-230)||(44439264-44439340)
chr2 (164-244)||(4894142-4894222)
chr2 (152-244)||(33019141-33019233)
chr2 (164-232)||(33961978-33962046)
chr2 (154-213)||(10618957-10619016)
chr2 (165-244)||(1976849-1976930)
chr2 (181-244)||(5977219-5977282)
chr2 (167-229)||(33502260-33502322)
chr2 (165-230)||(3352097-3352162)
chr2 (167-244)||(8800683-8800760)
chr2 (163-208)||(41494092-41494137)
chr2 (146-234)||(3817310-3817397)
chr2 (161-197)||(21659736-21659772)
chr2 (178-234)||(37541331-37541387)
[»] chr6 (17 HSPs)
chr6 (154-234)||(9505780-9505860)
chr6 (154-244)||(31305832-31305922)
chr6 (148-244)||(852536-852632)
chr6 (164-244)||(1485131-1485211)
chr6 (162-235)||(17225870-17225943)
chr6 (148-242)||(2234519-2234614)
chr6 (171-234)||(34027412-34027475)
chr6 (170-244)||(34620912-34620986)
chr6 (170-244)||(34748349-34748423)
chr6 (167-244)||(4910931-4911008)
chr6 (177-244)||(882719-882786)
chr6 (189-244)||(24982338-24982393)
chr6 (154-244)||(3482056-3482146)
chr6 (167-244)||(25195351-25195428)
chr6 (152-244)||(434222-434314)
chr6 (175-243)||(25388108-25388175)
chr6 (154-234)||(30926774-30926853)
[»] chr4 (23 HSPs)
chr4 (148-244)||(47144219-47144314)
chr4 (154-243)||(10185204-10185293)
chr4 (152-244)||(32818355-32818447)
chr4 (164-235)||(4243407-4243478)
chr4 (161-244)||(55927755-55927838)
chr4 (154-230)||(17897937-17898013)
chr4 (154-234)||(33843987-33844067)
chr4 (154-206)||(2206528-2206580)
chr4 (164-243)||(22250246-22250325)
chr4 (161-248)||(47314982-47315069)
chr4 (154-220)||(37439155-37439221)
chr4 (174-244)||(41751257-41751327)
chr4 (154-197)||(8330126-8330169)
chr4 (154-197)||(29728995-29729038)
chr4 (154-208)||(2206364-2206418)
chr4 (154-244)||(8604607-8604697)
chr4 (188-230)||(32100336-32100378)
chr4 (167-244)||(21691197-21691274)
chr4 (167-208)||(30357535-30357576)
chr4 (167-235)||(9064254-9064322)
chr4 (152-232)||(26911402-26911481)
chr4 (167-195)||(33456397-33456425)
chr4 (164-228)||(45329868-45329932)
[»] chr7 (10 HSPs)
chr7 (154-235)||(38123660-38123741)
chr7 (163-233)||(597942-598012)
chr7 (154-304)||(40491588-40491744)
chr7 (154-242)||(27571872-27571960)
chr7 (168-244)||(45557389-45557465)
chr7 (154-213)||(30182312-30182371)
chr7 (154-244)||(40561743-40561833)
chr7 (164-244)||(41788336-41788416)
chr7 (152-235)||(9183909-9183992)
chr7 (152-234)||(42344685-42344767)
[»] chr5 (16 HSPs)
chr5 (154-213)||(24306112-24306171)
chr5 (154-213)||(24367145-24367204)
chr5 (167-239)||(9818757-9818830)
chr5 (167-244)||(15368496-15368573)
chr5 (171-235)||(2937913-2937977)
chr5 (213-304)||(14671094-14671190)
chr5 (154-234)||(42858118-42858198)
chr5 (154-243)||(6951291-6951380)
chr5 (186-243)||(8591523-8591580)
chr5 (164-233)||(36639957-36640026)
chr5 (185-233)||(10898762-10898810)
chr5 (154-197)||(3738140-3738183)
chr5 (215-244)||(11577606-11577635)
chr5 (152-252)||(28031150-28031250)
chr5 (154-243)||(32980553-32980642)
chr5 (152-197)||(43310572-43310617)
[»] scaffold0361 (1 HSPs)
scaffold0361 (170-244)||(14099-14173)
[»] chr3 (20 HSPs)
chr3 (164-242)||(3776542-3776620)
chr3 (154-242)||(51285580-51285668)
chr3 (171-230)||(46853533-46853592)
chr3 (167-244)||(31708224-31708301)
chr3 (154-233)||(27266790-27266869)
chr3 (156-235)||(37335028-37335107)
chr3 (164-307)||(584709-584858)
chr3 (164-281)||(5406926-5407043)
chr3 (171-244)||(35264396-35264469)
chr3 (152-241)||(36302191-36302280)
chr3 (161-213)||(23187862-23187914)
chr3 (164-232)||(35253464-35253532)
chr3 (154-230)||(37703109-37703185)
chr3 (170-230)||(52364077-52364137)
chr3 (154-244)||(25359559-25359649)
chr3 (167-233)||(32523336-32523402)
chr3 (174-235)||(43776307-43776369)
chr3 (171-227)||(35058388-35058445)
chr3 (167-235)||(4526155-4526223)
chr3 (264-304)||(32112120-32112160)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 162 - 426
Target Start/End: Complemental strand, 213604 - 213340
Alignment:
Q  162 aaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaacctaattaccttcaaata 261  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  213604 aaaaattgtggcttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttacatgaatgcatccaaacctcattaccttcaaata 213505  T
Q  262 aattttacccataatcaattttacaagatcaattcactcaaaaccaaccttacaagtgattcggttctgaagacttaaaattgattctgcgtatgtttgc 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  213504 aattttacccagaatcaattttacaagatcaattcactcaaaaccaaccttacaaatgattcggttctgaagacttaaaattgattctgtgtatgtttgc 213405  T
Q  362 tcccacttttgagaagccagaatagattacaaatgcaaagaattgattataactagaagctccct 426  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  213404 tcccacttttgagaagccaaaatagattataaatgcaaagaattgattataactagaagctccct 213340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 213718 - 213585
Alignment:
Q  1 atcacgctgatcctatgtaattttccctctttcaattcagtcacattttgcattatcttaaataaaatgaatgctacaatgcaaattccaaaattgattc 100  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  213718 atcacgctaatcctatgtaattttccctctttcaattcactcacattttgcattatcttaaataaaatgaatgctacagtgcaaattccaaaattgattc 213619  T
Q  101 cgacttgaaactag--aaattgtggcttttgatt 132  Q
    ||||||||| ||||  ||||||||||||||||||    
T  213618 cgacttgaagctagaaaaattgtggcttttgatt 213585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 10325013 - 10324926
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatcca 241  Q
    |||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||   |||||||||||||| |||| |||||    
T  10325013 ttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatcca 10324926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 1514366 - 1514443
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||| ||| ||||||||||||||| || ||||||| |||| ||||||| ||||||||||||| ||||||||    
T  1514366 ttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaac 1514443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 48549087 - 48548999
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| || |||||||||||| |||||||| |||||||||||||||||  |||| |||| |||||||||||||||| |||| ||| ||||    
T  48549087 ttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaaaac 48548999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 33693031 - 33693083
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaat 206  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  33693031 ttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 6021828 - 6021891
Alignment:
Q  168 tgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatg 231  Q
    ||||||||||||||||||||| |||||||| |||||| ||| | || |||||||||||||||||    
T  6021828 tgtagcttttgattctataatagatttttacactcaagtttatggttcaactcacttttacatg 6021891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 3016172 - 3016262
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||| ||| || |||||||||||||||||| ||||||| |||| ||  ||||||   || ||||||||||||||||||||| ||||||||    
T  3016172 ttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaac 3016262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 7524123 - 7524213
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||  | ||||||||||||||| || |||||||||||| || ||||||| | || |||||||||||||||| ||||  |||||||    
T  7524123 ttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaac 7524213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 11049273 - 11049347
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatcca 241  Q
    |||||||||||||||||| |||||||||||| || ||||||| | || ||| |||||||||| |||||| |||||    
T  11049273 ttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 28083963 - 28083873
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| || || ||||||||||||||||||||||| ||||||| || |||||||   || || |||||||||||||||||  ||||||||    
T  28083963 ttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatccaaac 28083873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 7790717 - 7790644
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcactttta 227  Q
    |||||||||  | |||||| ||| |||||||||||||||||||| || ||||||| |||| |||||||||||||    
T  7790717 ttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 52339805 - 52339722
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||||||||||||||| |||||| | || ||| |||||| ||||| |||||||||| |||| ||| |||| |||||| |||||    
T  52339805 atttgaagttaaaaattatagcttctaatactagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatg 52339722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 24587932 - 24588001
Alignment:
Q  166 attgtagcttttgattct--ataattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    |||| |||||||||||||  |||||||||||| | |||||||||| || | |||||||||||||||||||    
T  24587932 attggagcttttgattctctataattgattttaacactcaaatttattattcaactcacttttacatgaa 24588001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 28287398 - 28287337
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttac 228  Q
    ||||||||||||||| || |||||||||| | |||||||||| |||| ||||| ||||||||    
T  28287398 ttgtagcttttgattttagaattgattttaacactcaaatttattgttcaactaacttttac 28287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 29759632 - 29759677
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttg 209  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||    
T  29759632 aaattggagcttctgattctataattgatttttacactcaaatttg 29759677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 3515828 - 3515879
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaa 205  Q
    |||||| || |||||||||||||| |||||| |||||||||||| |||||||    
T  3515828 ttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaa 3515879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 17284125 - 17284171
Alignment:
Q  173 cttttgattctataattgatttttaaactcaaatttgttgtacaact 219  Q
    |||||||||||| |||||||||||| |||||||||| |||| |||||    
T  17284125 cttttgattctaaaattgatttttacactcaaatttattgttcaact 17284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 30557527 - 30557602
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| ||||||||||| |||||||||| | ||  |||||| | || ||||||||||||| ||||||| ||||||||    
T  30557527 ttgtagtttttgattctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaac 30557602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 31362279 - 31362237
Alignment:
Q  155 tgaagttaaaaattgtagcttttgattctataattgattttta 197  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  31362279 tgaagttagaatttgtagcttttgattctagaattgattttta 31362237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 3515920 - 3515977
Alignment:
Q  251 accttcaaataaattttacccataatcaattttacaagatcaattcactcaaaaccaa 308  Q
    |||||||| | ||||||  ||| |||||||||||||  ||||||||||||||||||||    
T  3515920 accttcaactcaattttcaccagaatcaattttacataatcaattcactcaaaaccaa 3515977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 20720836 - 20720901
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttaca 229  Q
    |||||||| ||| |||||||| |||||||||||| | |||||||| |  | |||||||||||||||    
T  20720836 aaattgtaacttatgattctagaattgatttttacaatcaaatttatccttcaactcacttttaca 20720901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 52263689 - 52263632
Alignment:
Q  187 attgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||| |||||||||| ||||  |||||| |||||||| |||| ||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaac 52263632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 9939796 - 9939732
Alignment:
Q  161 taaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttt 225  Q
    ||||||||||||||| | ||||  ||||||| ||||| |||||||||| || | |||||||||||    
T  9939796 taaaaattgtagcttctaattccttaattgaattttacactcaaatttattattcaactcacttt 9939732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 26100208 - 26100131
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||||||||||||||||||| || ||||||| | || |||||||||||||||| |||||||||||||    
T  26100208 ttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaac 26100131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 13384731 - 13384653
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||| ||||| |||||||||||||||||| |||||||||| | || ||||||| | || ||||||||||||||||    
T  13384731 atttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 32927915 - 32927992
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||| || |||| ||||||| || ||||||| | || ||||||||||||||||||||| ||||||||    
T  32927915 ttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaac 32927992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 16972141 - 16972049
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||| || || |||||| |||| ||| || ||||||||||||||| ||||||| |||| ||| ||||||||||||||||| || |||||    
T  16972141 atttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaac 16972049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 35495293 - 35495360
Alignment:
Q  177 tgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||||||||| |||||||||| |||| ||| |||||||||  |||||| ||||||||    
T  35495293 tgattctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaac 35495360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 35495013 - 35495090
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||||||||| ||||| |||||| || ||||| | | || ||||| ||||||||||||||  ||||||||    
T  35495013 ttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaac 35495090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 7720199 - 7720272
Alignment:
Q  165 aattgtagcttttgattctataattgatttttaaactcaaatttgtt----gtacaactcacttttacatgaat 234  Q
    ||||||||||||||||||||||| | | ||||| |||||||||| ||    || ||||||||||||||||||||    
T  7720199 aattgtagcttttgattctataaataacttttacactcaaatttatttatggttcaactcacttttacatgaat 7720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 4662965 - 4662826
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac-ctaat-taccttcaaataaat 264  Q
    |||||||||||| ||||| |||||||||||| || ||||| | | || |||||| ||||| | |||||| |||||||| | ||| ||| || || | | |    
T  4662965 ttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactcgcttttccgtgaatgtatccaaacacaaatctacatttaactcagt 4662866  T
Q  265 tttacccataatcaattttacaagatcaattcactcaaaa 304  Q
    ||||  || |||||||||||||  ||||||||||||||||    
T  4662865 tttagtcagaatcaattttacataatcaattcactcaaaa 4662826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 38868508 - 38868583
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttaca 229  Q
    |||||| ||| | |||||||||||| |||||||||||||||| | || ||||||| | || ||||||| |||||||    
T  38868508 ttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactcaattttaca 38868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 5859106 - 5859048
Alignment:
Q  186 aattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||| || ||| ||| | || |||||||||||||||||||||||| |||||    
T  5859106 aattgatttttacacacaattttatggttcaactcacttttacatgaatgcattcaaac 5859048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 32994301 - 32994227
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||| |||| |||||||||||| || ||||||| | || ||| | |||||||||||||||  |||||||    
T  32994301 tagcttttgagtctagaattgatttttatacacaaatttatagtgcaaatgacttttacatgaatgagtccaaac 32994227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 18355801 - 18355768
Alignment:
Q  271 cataatcaattttacaagatcaattcactcaaaa 304  Q
    ||||||||||||||||| ||||||||||||||||    
T  18355801 cataatcaattttacaaaatcaattcactcaaaa 18355768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 32767413 - 32767489
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcactttt--acatgaatgcatccaaac 244  Q
    ||||||||||||| | || ||| ||||| ||| |||||| |||| ||||||||||||  ||||||||| ||||||||    
T  32767413 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaatgtatccaaac 32767489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 38203296 - 38203369
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcactttta 227  Q
    |||||||||||||||  || || |||||||| |||| ||||| | | | ||||||||||| |||||||||||||    
T  38203296 ttgaagttaaaaattagaggttatgattctagaattaattttaatatttaaatttgttgttcaactcactttta 38203369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 4336615 - 4336575
Alignment:
Q  264 ttttacccataatcaattttacaagatcaattcactcaaaa 304  Q
    ||||| ||| |||||||||||||| ||||||||||||||||    
T  4336615 ttttagccacaatcaattttacaaaatcaattcactcaaaa 4336575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 42982554 - 42982643
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||| || ||||||||||||||||||| | |||||||||||| || ||||||| || ||||||||||||||||||||||| |||||||    
T  42982554 ttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatccaaa 42982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 42740987 - 42741063
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||| ||| | |||||||||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||||||    
T  42740987 ttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat 42741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 44439264 - 44439340
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||| ||||| ||| |||||||||||||| |||||||||| | |||||||||| |||| ||||||||||||||||    
T  44439264 ttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacat 44439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 4894222 - 4894142
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||| || | ||| ||||||||| ||||||| ||| ||||    
T  4894222 aaatcgtagcttttgattctataattgattattatactcaaatttattattcaagtcacttttaaatgaatgtatctaaac 4894142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 33019233 - 33019141
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||| || || |||||||||||| || || |||||||||| | ||  |||||| | || ||||||||||||||||||||||||||||||    
T  33019233 atttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatccaaac 33019141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 33962046 - 33961978
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatga 232  Q
    |||||| || |||||||||||||||||||||||| |||||||||| |||| ||| ||| ||||||||||    
T  33962046 aaattggagtttttgattctataattgatttttagactcaaatttattgttcaagtcatttttacatga 33961978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 10619016 - 10618957
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgt 213  Q
    |||||| || |||||  ||||||||||||||||||||||||| | |||||||||||||||    
T  10619016 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt 10618957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 1976930 - 1976849
Alignment:
Q  165 aattgtagcttttgattctataattgattttt--aaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||| ||| | |||||| |||||||||||  | |||||||||| ||||  |||||||||||||||||||| ||||||||    
T  1976930 aattgtaacttctaattctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaac 1976849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 5977219 - 5977282
Alignment:
Q  181 tctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| ||||||||||| ||||||||| |||| || |||||||||| ||||||| || |||||    
T  5977219 tctatatttgatttttaacctcaaatttattgttcacctcacttttatatgaatgaattcaaac 5977282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 33502260 - 33502322
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttaca 229  Q
    ||||| |||||||||||| |||||||||||| || || |||| | || |||||||||||||||    
T  33502260 ttgtaacttttgattctaaaattgatttttacacacatatttatagttcaactcacttttaca 33502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 3352097 - 3352162
Alignment:
Q  165 aattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    ||||| ||||||||||||||||||||||||| | || ||||||| |  | ||||| ||||||||||    
T  3352097 aattgcagcttttgattctataattgattttcacacacaaatttatgtttcaacttacttttacat 3352162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 8800760 - 8800683
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||| ||||||| ||||||||||||||| | |  ||||||| |  | ||||||||||||||||||| | ||||||||    
T  8800760 ttgtaacttttgaatctataattgattttaatatacaaatttataattcaactcacttttacatgaacgtatccaaac 8800683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 41494137 - 41494092
Alignment:
Q  163 aaaattgtagcttttgattctataattgatttttaaactcaaattt 208  Q
    ||||||||||||| ||||| ||||||||||||||| ||| ||||||    
T  41494137 aaaattgtagcttctgattttataattgatttttacacttaaattt 41494092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 3817397 - 3817310
Alignment:
Q  146 atttcaatttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||| ||||||||||||||  |||  | |||||||| ||||||||||||||| ||| ||||||||||| ||| | | ||||| ||||||    
T  3817397 attttaatttgaagttaaattttgatgtttttgatt-tataattgatttttacacttaaatttgttgttcaatttatttttatatgaat 3817310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21659736 - 21659772
Alignment:
Q  161 taaaaattgtagcttttgattctataattgattttta 197  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21659736 taaaaattgtagcttatgattctagaattgattttta 21659772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 37541331 - 37541387
Alignment:
Q  178 gattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    ||||||| ||||||||||||  ||||||||| ||||  |||| ||||||||||||||    
T  37541331 gattctacaattgatttttagcctcaaatttattgtttaacttacttttacatgaat 37541387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 9505780 - 9505860
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||| || |||||| ||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||    
T  9505780 ttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatgaat 9505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 31305922 - 31305832
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| ||||||||| |||||||||||||| ||||||||| || |||||||||| |||  |||||||||||||||| |||  ||||||||    
T  31305922 ttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaac 31305832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 852536 - 852632
Alignment:
Q  148 ttcaatttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||| |||||| || ||||||||| || |||||||| |||||||||||| || ||||| | ||||  ||||||||||||||||||||||| |||||    
T  852536 ttcaacttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatgaatgcatacaaac 852632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 1485211 - 1485131
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| |||||||||||||| |||||||||| | |||||||||| |||| |||||||||||||||| | || ||||||||    
T  1485211 aaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaaac 1485131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 17225870 - 17225943
Alignment:
Q  162 aaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||||||||||||||||||||| |||||||||||| |  ||||||| | || ||||||| |||||||||||||    
T  17225870 aaaaattgtagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatg 17225943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 2234519 - 2234614
Alignment:
Q  148 ttcaatttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaattt-gttgtacaactcacttttacatgaatgcatccaa 242  Q
    ||||| |||||| |||||| || |||||||||||||| |||||||||| | ||||||||||  |||| ||||||||| |||||| |||| ||||||    
T  2234519 ttcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaatttatttgttcaactcactattacataaatgtatccaa 2234614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 34027475 - 34027412
Alignment:
Q  171 agcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||||||||||| |||||||||||| |||||||||| || | ||||||||| ||||||||||    
T  34027475 agcttttgattctagaattgatttttacactcaaatttattattcaactcactcttacatgaat 34027412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 34620912 - 34620986
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| |||||||| |||||||||||| ||| |||||| || | |||||||||||||||| |||| ||||||||    
T  34620912 tagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaac 34620986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 34748349 - 34748423
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| |||||||| |||||||||||| ||| |||||| || | |||||||||||||||| |||| ||||||||    
T  34748349 tagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaac 34748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 4910931 - 4911008
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||||||||| |||||||||| | |  ||||||| | || | |||||||||||||| |||| ||||||||    
T  4910931 ttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaac 4911008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 882719 - 882786
Alignment:
Q  177 tgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| | |||||||||||| | |||||||| ||||  ||||||||||| |||||||| ||||||||    
T  882719 tgattcaaaaattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaac 882786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 24982338 - 24982393
Alignment:
Q  189 tgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||| |||||||||| |||| ||||| ||||||||||||||| || |||||    
T  24982338 tgatttttacactcaaattttttgttcaacttacttttacatgaatgtatacaaac 24982393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 3482056 - 3482146
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||| | ||||||| ||||||| || |||||||||| | || ||| ||| | || ||||| ||||||||||||||| || |||||    
T  3482056 ttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattcaaac 3482146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 25195428 - 25195351
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| |||| ||||||||||||||||| | || |||||||    | |||||||||||||||| |||| ||||||||    
T  25195428 ttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatccaaac 25195351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 434314 - 434222
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||||| |  |||||||||||| || |||||||||||| ||  ||||||    | ||||||||||||||| ||||  ||||||||    
T  434314 atttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactcacttttacacgaatatatccaaac 434222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 25388108 - 25388175
Alignment:
Q  175 tttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    ||||||| || |||||||||| | |||||||||| |||| |||||||||||||||| |||  |||||||    
T  25388108 tttgattttagaattgattttgacactcaaatttattgt-caactcacttttacataaatatatccaaa 25388175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 30926853 - 30926774
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||| || |||||| || |||| |||||| |||||||||||| |||||||||| |||| ||| | |||||| |||||||    
T  30926853 ttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgttcaa-ttacttttgcatgaat 30926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 47144219 - 47144314
Alignment:
Q  148 ttcaatttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||  || |||||| |||| ||||| ||||||| ||||||| ||||||||    
T  47144219 ttcaatttgaagttaaaaatt-tagtttatgattctataattgatttttacgctaaaatttattgtccaactaacttttagatgaatgtatccaaac 47144314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 10185204 - 10185293
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||| || |||||| |||||||||||||| ||||||| |||| |||||||||| ||||  ||||||||||||||| |||| |||||||    
T  10185204 ttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatccaaa 10185293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 32818447 - 32818355
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||| || || |||||||||||||||||| |||||||||||  || ||||||| | || ||||| ||||||||||||||| ||||||||    
T  32818447 atttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaac 32818355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 4243407 - 4243478
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    |||||| |||||||||||||| |||||||||||| |||||||||| |||| | |||||||||||||| ||||    
T  4243407 aaattggagcttttgattctagaattgatttttacactcaaatttattgttctactcacttttacatcaatg 4243478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 55927838 - 55927755
Alignment:
Q  161 taaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||| |||||||| |||||||  | | |||||||||| |||| ||| ||||||||||||||||| ||||||||    
T  55927838 taaaaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatccaaac 55927755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 17898013 - 17897937
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||||||||||| ||||||||||||||||||||| || |  | ||||| ||  ||||||||||||||||||||    
T  17898013 ttgaagttaaaaattgcagcttttgattctataattgaattctgcaatcaaacttactgtacaactcacttttacat 17897937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 33843987 - 33844067
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||| || |||||| |||||||||||||| |||||||||| | |||||||||| |||| ||||| | ||||||||||||    
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaacttatttttacatgaat 33844067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 2206528 - 2206580
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaat 206  Q
    |||||| |||| ||||||||||||||||||||||||| |||||| ||||||||    
T  2206528 ttgaagctaaacattgtagcttttgattctataattgttttttacactcaaat 2206580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 22250246 - 22250325
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||| |||||||||||||  ||||| |||| | |||||||||| |||| | | ||||||||||||||||| |||||||    
T  22250246 aaattgaagcttttgattctgaaattgcttttaatactcaaatttattgttcgattcacttttacatgaatgtatccaaa 22250325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 47315069 - 47314982
Alignment:
Q  161 taaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaacctaa 248  Q
    |||||||| |||||| | ||| || |||||||| ||| | |||||||| || | ||||| ||||||||||| ||||||||||||||||    
T  47315069 taaaaattatagcttctaattttagaattgattattacagtcaaatttattttccaacttacttttacatgtatgcatccaaacctaa 47314982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 37439155 - 37439221
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactc 220  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| ||| |||| ||||||    
T  37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgttcaactc 37439221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 41751327 - 41751257
Alignment:
Q  174 ttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||| |||||||||||||||| |||||| ||||  || ||| ||||||||||||| || |||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtttaattcagttttacatgaatgtattcaaac 41751257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 8330126 - 8330169
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgattttta 197  Q
    |||||| || |||||| |||||||||||||||||||||||||||    
T  8330126 ttgaagctagaaattggagcttttgattctataattgattttta 8330169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 29728995 - 29729038
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgattttta 197  Q
    |||||||||||||||| |||||||||||| | ||||||||||||    
T  29728995 ttgaagttaaaaattgaagcttttgattcaagaattgattttta 29729038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 2206418 - 2206364
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaattt 208  Q
    |||||| ||||||||| ||||||||||||||  ||||||||||  ||||||||||    
T  2206418 ttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaattt 2206364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 8604697 - 8604607
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| ||| | |||||||||| ||||||| |||||||||| | || ||||||| | ||  ||  |||||||||||||||| ||||||||    
T  8604697 ttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaaac 8604607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 32100336 - 32100378
Alignment:
Q  188 ttgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||||| |||||||||| |||| ||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttttacat 32100378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 21691274 - 21691197
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||| || || |||||||||| | || ||||||| | || |||| |||||||||||||||  ||||||||    
T  21691274 ttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatccaaac 21691197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 30357535 - 30357576
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaattt 208  Q
    ||||||||||||||| ||||||||||||||| || |||||||    
T  30357535 ttgtagcttttgattatataattgatttttacacacaaattt 30357576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 9064254 - 9064322
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    |||||| ||||||||||| |||||||||| | |||||| |||   || |||||||||||||||| ||||    
T  9064254 ttgtagtttttgattctagaattgattttcacactcaagtttacggttcaactcacttttacataaatg 9064322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 26911481 - 26911402
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatga 232  Q
    |||||||||||  | |||||| |||||||| ||||||||||||||| | |||||||| || | ||| ||||||||| ||||    
T  26911481 atttgaagttagtatttgtag-ttttgattatataattgatttttacattcaaatttattattcaaatcacttttatatga 26911402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 33456397 - 33456425
Alignment:
Q  167 ttgtagcttttgattctataattgatttt 195  Q
    |||||||||||||||||||||||||||||    
T  33456397 ttgtagcttttgattctataattgatttt 33456425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 45329868 - 45329932
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttac 228  Q
    |||||| | |||||||||||| ||||||| |||| |||||||||| |||| |||| ||| |||||    
T  45329868 aaattgaatcttttgattctaaaattgatatttacactcaaattttttgttcaacccacatttac 45329932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 38123741 - 38123660
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    |||||| || |||||||||||| | |||||| |||||||||||| |||||||||| |||  |||||||||||||||||||||    
T  38123741 ttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatg 38123660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 598012 - 597942
Alignment:
Q  163 aaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    |||||||||||||| |||||||||||||||| ||  ||| |||||| |||| |||||||||||||||||||    
T  598012 aaaattgtagctttcgattctataattgattcttgcactaaaatttattgttcaactcacttttacatgaa 597942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 304
Target Start/End: Original strand, 40491588 - 40491744
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaacctaa----- 248  Q
    ||||||||||   |||||||||||||||||| |||||| ||||| || |||||||   ||  |||||||||||||||||||| |||||||  |||         
T  40491588 ttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcac 40491687  T
Q  249 -ttaccttcaaataaattttacccataatcaattttacaagatcaattcactcaaaa 304  Q
     |||||||||| | | |||||  || |||||||||||||  ||||||||||||||||    
T  40491688 tttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaa 40491744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 27571872 - 27571960
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaa 242  Q
    ||||||||| |||||| |||||||||||||| |||||||||| | |||||| ||| || | |||||||| ||||||| |||| ||||||    
T  27571872 ttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtatccaa 27571960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 45557389 - 45557465
Alignment:
Q  168 tgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||| ||||||  ||||||||||| || ||||||||| |  ||||||||||||||||||||| ||||||||    
T  45557389 tgtagcttttaattctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaac 45557465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 30182371 - 30182312
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgt 213  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  30182371 ttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgt 30182312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 40561833 - 40561743
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||| ||||||||| || | | |||| |||| |||| || |||||||| | |||| ||||||||||||||||||||| ||||||||    
T  40561833 ttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaac 40561743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 41788336 - 41788416
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| | ||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||||| || |||| || |||||    
T  41788336 aaattgaaacttttgagtctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaac 41788416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 9183992 - 9183909
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||||||||||||||||||| |||| || ||| |||||| ||||| | |||||||| |||| ||| ||||  ||||| |||||    
T  9183992 atttgaagttaaaaattgtagtttttaatactagaattgagttttatattcaaatttattgttcaagtcacacttacacgaatg 9183909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 42344767 - 42344685
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||||||| ||| ||||||| | |||||||||||||||||||||  |  |||||||  || ||||||| | ||||||||||    
T  42344767 atttgaagttgaaatttgtagcatctgattctataattgatttttactcataaatttgaagttcaactcattattacatgaat 42344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 24306171 - 24306112
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgt 213  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgt 24306112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 24367145 - 24367204
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgt 213  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgt 24367204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 9818757 - 9818830
Alignment:
Q  167 ttgtagcttttgattctataattgattttt-aaactcaaatttgttgtacaactcacttttacatgaatgcatc 239  Q
    |||||||||||||||||| ||||||||||| |||| ||||||| | || ||||||||||||| |||||||||||    
T  9818757 ttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttttatatgaatgcatc 9818830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 15368496 - 15368573
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||| |||||||||||||||| |||| |||||||| |||||| ||| ||||||||||||| ||| || |||||    
T  15368496 ttgtagcttctgattctataattgatctttacactcaaatatgttgttcaagtcacttttacatggatgtattcaaac 15368573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 2937977 - 2937913
Alignment:
Q  171 agcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||||| ||||||||||||||||||||| ||||||||  ||| ||||| ||||||||| |||||    
T  2937977 agcttttaattctataattgatttttaaattcaaatttaatgttcaacttacttttacacgaatg 2937913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 14671094 - 14671190
Alignment:
Q  213 tacaactcacttttacatgaatgcatccaaacctaa-----ttaccttcaaataaattttacccataatcaattttacaagatcaattcactcaaaa 304  Q
    |||||||||||||||||||||||||||||||| |||     | || ||||| | | ||||| ||||||||||||| |||| ||||||||| ||||||    
T  14671094 tacaactcacttttacatgaatgcatccaaacataaatacttcacattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaa 14671190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 42858118 - 42858198
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaat 234  Q
    |||||||||  | ||| ||||||| ||||||||||||||||| | || ||||||| | || ||||||||||||||||||||    
T  42858118 ttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaat 42858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 6951380 - 6951291
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||||||  | |||||||||||||||||||||||||||| || ||  |||||| |  | ||| ||||||||||||||||  |||||||    
T  6951380 ttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacatgaatttatccaaa 6951291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 8591523 - 8591580
Alignment:
Q  186 aattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||||||||  ||||||||||||||| ||||||||||||| | ||||| |||||||    
T  8591523 aattgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaa 8591580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 36639957 - 36640026
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    |||||||||||| | |||||| ||||| |||||| ||||||||||  ||| || ||||||||||||||||    
T  36639957 aaattgtagcttctaattctagaattgttttttacactcaaatttaatgttcacctcacttttacatgaa 36640026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 10898762 - 10898810
Alignment:
Q  185 taattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    ||||||||||||| || ||||||| |||| |||||||||||||||||||    
T  10898762 taattgatttttacacacaaatttattgttcaactcacttttacatgaa 10898810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 3738183 - 3738140
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgattttta 197  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  3738183 ttgaagttagaagttgtagtttttgattctataattgattttta 3738140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 11577635 - 11577606
Alignment:
Q  215 caactcacttttacatgaatgcatccaaac 244  Q
    ||||||||||||||||||||||||||||||    
T  11577635 caactcacttttacatgaatgcatccaaac 11577606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 28031250 - 28031150
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac-ctaatt 250  Q
    |||||||||||||| || ||  |||||||| ||||||||| |||| ||| ||||||| | |  ||||| ||||||||||||||| || ||||| ||||||    
T  28031250 atttgaagttaaaatttatattttttgattatataattgactttt-aacacaaatttatagatcaacttacttttacatgaatgtattcaaacactaatt 28031152  T
Q  251 ac 252  Q
    ||    
T  28031151 ac 28031150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 32980553 - 32980642
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaa 243  Q
    |||||||||| | || || |||||||||||| || ||||||||| | |||||||| |||  | | | ||||||||||||||| |||||||    
T  32980553 ttgaagttaagatttatatcttttgattctacaaatgatttttacattcaaatttattgctcgagttacttttacatgaatgtatccaaa 32980642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 43310617 - 43310572
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgattttta 197  Q
    |||||||| || |||||||||||||||||| || ||||||||||||    
T  43310617 atttgaagatagaaattgtagcttttgattatagaattgattttta 43310572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 14173 - 14099
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||| |||||||| |||||||||||| |||||||||| || | ||||||||||| ||||||||| ||||||||    
T  14173 tagcttatgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaac 14099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 3776542 - 3776620
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaa 242  Q
    |||||||||||| |||||||| |||| ||||||| ||||||||||||||   ||||||||||||||| |||| ||||||    
T  3776542 aaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaa 3776620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 51285580 - 51285668
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaa 242  Q
    |||||| |||||||   |||||||||||||| |||||||||||  |||||||||||||||  ||| | |||||||||||||| ||||||    
T  51285580 ttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaa 51285668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 46853592 - 46853533
Alignment:
Q  171 agcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||||||||| |||||||||| | |||||||||| |||| ||||||||||||||||    
T  46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 46853533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 31708301 - 31708224
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||||||||| |||||||| | | || ||||||| |  | ||||||||||||||||||||| ||||||||    
T  31708301 ttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaac 31708224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 27266869 - 27266790
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    |||||| || |||||||||||  |||||| | |||| ||||||| |||||||||| |||| ||||| |||||||||||||    
T  27266869 ttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaa 27266790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 37335107 - 37335028
Alignment:
Q  156 gaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||||| |||| |||||||||||||||| |||||||||||| |||  ||||  |||| ||||||| ||||| |||||||    
T  37335107 gaagttagaaatcgtagcttttgattctagaattgatttttacacttgaattcattgttcaactcatttttatatgaatg 37335028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 584858 - 584709
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaacctaa------ttaccttca 257  Q
    |||||||||||||  |||||  |||||||||||  | |||||||  ||||  | ||||||||||||| |||| ||||||||  ||      ||| |||||    
T  584858 aaattgtagctttaaattcttgaattgatttttgcagtcaaattaattgtttagctcacttttacataaatgtatccaaacagaaatccatttagcttca 584759  T
Q  258 aataaattttacccataatcaattttacaagatcaattcactcaaaacca 307  Q
    | | ||||||| | | |||||||||||||| |||||||||||||||||||    
T  584758 acttaattttagctaaaatcaattttacaaaatcaattcactcaaaacca 584709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 5406926 - 5407043
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaacctaa--ttaccttcaaata 261  Q
    |||| ||||||| ||||| || |||||||||||||||  ||||||  | | ||| ||||||||||||||||| |||||||| |||  |||||||||| |     
T  5406926 aaatggtagcttctgattatagaattgatttttaaac--aaatttactcttcaaatcacttttacatgaatgtatccaaacataactttaccttcaactc 5407023  T
Q  262 aattttacccataatcaatt 281  Q
    ||||||| | | ||||||||    
T  5407024 aattttagctagaatcaatt 5407043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 35264469 - 35264396
Alignment:
Q  171 agcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    |||||||||||||| |||||||||| | ||| |||||| |||| ||| ||| ||||||||||||| | ||||||    
T  35264469 agcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaac 35264396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 36302191 - 36302280
Alignment:
Q  152 atttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatcca 241  Q
    |||||||| || | |||| || |||||||| || ||||||||||   ||| |||||| |||| ||||||||||||||||||||| |||||    
T  36302191 atttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaactcacttttacatgaatgaatcca 36302280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 23187862 - 23187914
Alignment:
Q  161 taaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgt 213  Q
    ||||||||| ||||||| |||||| |||||| ||||| |||||||||||||||    
T  23187862 taaaaattggagcttttaattctagaattgaattttacactcaaatttgttgt 23187914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 35253532 - 35253464
Alignment:
Q  164 aaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatga 232  Q
    |||| ||||||| || ||||| |||||||||||| |||||||||| |  | ||||||||||||||||||    
T  35253532 aaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 35253464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 37703109 - 37703185
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||| ||||||||| ||| | ||| || |||| ||||||| |||||||||| |||| ||| ||||||||||||    
T  37703109 ttgaagtttaaaattgtaacttcttattttaaaattaatttttacactcaaatttattgttcaattcacttttacat 37703185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 52364077 - 52364137
Alignment:
Q  170 tagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacat 230  Q
    |||||||||||||||||||||||||| ||||  ||||||   || ||||||||||||||||    
T  52364077 tagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttacat 52364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 25359649 - 25359559
Alignment:
Q  154 ttgaagttaaaaattgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatgcatccaaac 244  Q
    ||||||||| || |||||| |||| ||||||||||||||||| | || || |||| ||||  || |||||| || ||||||| ||||||||    
T  25359649 ttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgttaaaatcacttctatatgaatgtatccaaac 25359559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 32523402 - 32523336
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaa 233  Q
    |||||||||||||||||| |||||||||||| || |||||||   ||  ||||||||| ||||||||    
T  32523402 ttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaactcacttatacatgaa 32523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 43776369 - 43776307
Alignment:
Q  174 ttttgattctataattgatttttaaactcaaatttgttgtacaactca-cttttacatgaatg 235  Q
    ||||||||||||||||||||||||| || |||||| | || |||||||  |||||||||||||    
T  43776369 ttttgattctataattgatttttaatctgaaatttatagttcaactcagtttttacatgaatg 43776307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 35058388 - 35058445
Alignment:
Q  171 agcttttgattctataattgatttttaaactcaaat-ttgttgtacaactcactttta 227  Q
    |||||||||||||| |||||||||| | |||||||| || |||| |||||||||||||    
T  35058388 agcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 4526155 - 4526223
Alignment:
Q  167 ttgtagcttttgattctataattgatttttaaactcaaatttgttgtacaactcacttttacatgaatg 235  Q
    ||||| ||||||||| || |||||||||||| || ||||||| | || |||| ||||||||||| ||||    
T  4526155 ttgtaacttttgattttaaaattgatttttacacacaaatttatagttcaacacacttttacataaatg 4526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 32112120 - 32112160
Alignment:
Q  264 ttttacccataatcaattttacaagatcaattcactcaaaa 304  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  32112120 ttttatccataatcaattttacataatcaattcactcaaaa 32112160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University