View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_high_25 (Length: 427)
Name: NF14572_high_25
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 49272416 - 49272006
Alignment:
| Q |
1 |
tgttgtttaatttgttgttgaagagattcaatgtacaaggttgttgcctctgcaaatgtatataggtatcaactctagaagttaatttcttgaaatgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
49272416 |
tgttgtttaatttgttgttgaagagattgaatgtacaaggatgttgcctctgcaaatgtatataggtatcaaatcttgaagttaatttcttgaaatgtca |
49272317 |
T |
|
| Q |
101 |
a-gtgtttgtagtaacccgtta-gaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcacc |
198 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272316 |
aagtgtttgtagtaacccgttaagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcacc |
49272217 |
T |
|
| Q |
199 |
aatccttttgtgatatcagtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaatttctttaactcaatatttc |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272216 |
aatccttttgtgatatcggtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaatttctttaactcaatatttc |
49272117 |
T |
|
| Q |
299 |
aatttccctattcttaaagggatttggcctcttaagcgcgattctttaaaagaagcaatgtgtcacgccaggtcaagtttgataaatcacgccaaaaatg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49272116 |
aatttccctattcttaaagggatttggcctcttaa--gcgattctttaaaagaagcaatatgtcacgcctggtcaagtttgataaatcacgccaaaaatg |
49272019 |
T |
|
| Q |
399 |
ttgttgtagatat |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49272018 |
ttgttgtagatat |
49272006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 13225263 - 13225168
Alignment:
| Q |
106 |
ttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
201 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || ||| |||||| ||| |||||| | |||| || | ||||||||||| |||||||| |
|
|
| T |
13225263 |
ttgtagtaacccgttagaaccgagttttggtggtaatgcaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaat |
13225168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 13315104 - 13315200
Alignment:
| Q |
105 |
tttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
201 |
Q |
| |
|
||||||| |||||||| ||||| | ||| || |||||| ||||| || ||||||| ||||||| |||| || | |||||||||||||||||||| |
|
|
| T |
13315104 |
tttgtagcaacccgttggaaccgagtttcgggggtagtctaccaatgagtgaattgttgaaaacttggaaagtgttgagttttggaagctcaccaat |
13315200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University