View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_26 (Length: 405)
Name: NF14572_high_26
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 390
Target Start/End: Original strand, 39951295 - 39951681
Alignment:
| Q |
4 |
caaaggaaatatctgcttactactcaacatttgattaatcgcacaaatacttcacacaaaaataaggaactcatacataaaacaatgaactagtaaagac |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951295 |
caaaggaaatatatgcttactactcaacatttgattaatcgcacaaatacttcacacaaaaataaggaactcatacataaaacaatgaactagtaaagac |
39951394 |
T |
|
| Q |
104 |
tagagctaccaaagagaaaaaacaaacaattagacactttaaaaagcattttactaatatacattcccattgagaagttttatatcacatcatttatgtt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951395 |
tagagctaccaaagagaaaaaacaaacaattagacactttaaaaagcattttactaatatacattcccattgagaagttttatatcacatcatttatgtt |
39951494 |
T |
|
| Q |
204 |
ttgcaaatatttctagtatcnnnnnnntaagtaatgctcaaagagaaaaatcaatgatacgaactaaccnnnnnnntactcaaattttctccagttaata |
303 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
39951495 |
ttgcaaatatttctagtatcaaaaaaataagtaatgctcaaagagaaaaatcaatgatacgaactaaccaaaaaaatactcaaattttttccagttaata |
39951594 |
T |
|
| Q |
304 |
gttcaatgagtcacatttgtgcttctgacaaaaaagagtcaagttggtttctgacccaactctcaatcctaaatgagtagtaaaaat |
390 |
Q |
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| T |
39951595 |
gttcaatgagtcacatttgtgcttctgacaaaaaagagtcaagttggtttctgacccaactctcaatcctaaatgagtagtaaaaat |
39951681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 390
Target Start/End: Complemental strand, 26018668 - 26018275
Alignment:
| Q |
4 |
caaaggaaatatctgcttactactcaacatttgattaatcgcacaaatacttcacacaaaaa-taaggaactcatacataaaacaatgaactagtaaaga |
102 |
Q |
| |
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|||||||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
26018668 |
caaaggaaatgtatgcttacaactcaacatttgattgatcgcacaaatacttcgcacaaaaaataaggaacacatacataaaacaaagaactagtaaaga |
26018569 |
T |
|
| Q |
103 |
ctagagctaccaaagagaaaaaacaaacaattagacactttaaaaagcattttactaatataca----ttcccattgagaagttttatatcacatcattt |
198 |
Q |
| |
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||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||| | ||||||||||| ||| |||||||||||||| |
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| T |
26018568 |
ctagagctaacaaagagaaaaaagaaacaattgaacactttaaaaagtgttttactaatatacatccttacccattgagaaatttcatatcacatcattt |
26018469 |
T |
|
| Q |
199 |
atgttttgcaaatatttctagtatc--nnnnnnntaagtaatgctcaaagagaaaaatcaatgatacgaactaaccnnnnnnntactcaaattttctcca |
296 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
26018468 |
atgtttcgcaaatatttctagtatcataaaaaaataagtaatgctcaaagagaaaaatcaacgatacgaactaaccaaaataatactcaaattttctcca |
26018369 |
T |
|
| Q |
297 |
gttaatagttcaatgagtcacatttgtgcttctgacaaaaaagagtcaagttggtttctgacccaactctcaatcctaaatgagtagtaaaaat |
390 |
Q |
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|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||| |
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| T |
26018368 |
gttaatagttcaatcagacacgtttgtgcttctgacaaaaaagagtcaagttggtttctaacccaagtcttaatcctaactgagtagtaaaaat |
26018275 |
T |
|
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