View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_28 (Length: 392)
Name: NF14572_high_28
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 6635104 - 6634904
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635104 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
6635005 |
T |
|
| Q |
101 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatcttttgcagacaccattttctcttgattcttgattagggaag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635004 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatcttttgcagacaccattttctcttgattcttgattagggaag |
6634905 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
6634904 |
g |
6634904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 266 - 390
Target Start/End: Complemental strand, 6634833 - 6634709
Alignment:
| Q |
266 |
gagacaattgtgaagtgaagaatatgagacttttcaatattgttgagnnnnnnntaatgactttgtatatagttgaagagttgcacattttgaatatgta |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6634833 |
gagacaattgtgaagtgaagaatatgagacttttcaatattgttgagaaaaaaataatgactttgtatatagttgaagagttgcatattttgaatatgta |
6634734 |
T |
|
| Q |
366 |
gattcatcgagtaatttttgttctt |
390 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
6634733 |
gattcatcgagtaatttttgttctt |
6634709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 52163999 - 52163809
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||||| ||||||||||| || |
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|
| T |
52163999 |
atcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaaggtaaaccttg |
52163900 |
T |
|
| Q |
101 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatcttttgcagacaccattttctcttgattcttga |
191 |
Q |
| |
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||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||| ||||||||||| |
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| T |
52163899 |
ggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactccattttcttttgattcttga |
52163809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 15964337 - 15964178
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||| | | ||||||||||| || |||||||||||||||||||||||||| ||||| || |
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|
| T |
15964337 |
atcaacatggacttggtggtgataatttgaatggtgtttgtagatctttgcatcctggtcctgttagtttattgcattggagtggaaaaggaaaaccttg |
15964238 |
T |
|
| Q |
101 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatct |
160 |
Q |
| |
|
||| || | |||| || | | |||||||||| ||| | ||||||| ||||||||||| |
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|
| T |
15964237 |
ggttaggcttgatgagaaaaaagcttgtcctttagattcactttgggagccttatgatct |
15964178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7266408 - 7266252
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | || |||||| | ||| | ||||| || || ||||||||| | ||||||||||| || |||||||| || |
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|
| T |
7266408 |
atcaacatgggcttggcggtgataatttccatgggctttgtcgggatttgcatccgggcccggtgagtttacttcattggagtgggaagggtaaaccgtg |
7266309 |
T |
|
| Q |
101 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatga |
157 |
Q |
| |
|
|| || | ||||||||| | |||||||| ||||||||| | ||||| || ||||| |
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|
| T |
7266308 |
ggccaggcttgatgctaatcgtccttgtccgttggatgctttgtgggccccatatga |
7266252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 48999205 - 48999158
Alignment:
| Q |
66 |
agtttattgcattggagtggaaaaggtaaaccatgggtgagattggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
48999205 |
agtttattgcattggagtggaaaaggtaaaccatggttgaggttggat |
48999158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27101186 - 27101086
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || | | ||||||| | | |||||||||||||| ||||| || ||||||||||| ||||| |||||||| |
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|
| T |
27101186 |
atcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaagggaaaccatg |
27101087 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
27101086 |
g |
27101086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33346689 - 33346846
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||| ||||| || || |||||||||||||| || |||||| | ||| | ||||| || || |||||||| |||||||||||||||||||| || || || |
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|
| T |
33346689 |
atcagcatgggctcggcggtgataattttcgtgggctttgtcgggatttgcatccaggcccggtgagtttgttgcattggagtggaaaagggaagccgtg |
33346788 |
T |
|
| Q |
101 |
ggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgat |
158 |
Q |
| |
|
|| || | |||| ||||| ||||||||||||||||| | ||||| || |||||| |
|
|
| T |
33346789 |
ggccaggcttgatgggaatagggcttgtcctttggatgctttgtgggctccatatgat |
33346846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2498598 - 2498498
Alignment:
| Q |
1 |
atcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagtggaaaaggtaaaccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || | | ||||||| | | |||||||||||||| ||||| || ||||||||||| ||||| |||||||| |
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|
| T |
2498598 |
atcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaagggaaaccatg |
2498499 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
2498498 |
g |
2498498 |
T |
|
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