View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_29 (Length: 387)
Name: NF14572_high_29
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 7406840 - 7407195
Alignment:
| Q |
18 |
cctctctccccttatcattttgtgatttgtatggagcttttgtcccatgatattttgaaggcagtggagttgaatcgttagaaggcaatgaacatatctt |
117 |
Q |
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| T |
7406840 |
cctctctccccttatcattttgtgatttgtatggagtttttgtcccatgatattttgaaggcagtggagttgaatcgttagaaggcaatgaacatatctt |
7406939 |
T |
|
| Q |
118 |
gcaatgggacgactctatcccacttattttatgtggataatgttcttttgtttactaaggctaggagatctcaagttctcatggtgtaaggtattttgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7406940 |
gcaatgggacgactctatcccacttattttatgtggataatgttcttttgtttactaaggctaggagatctcaagttctcatggtgtaaggtattttgat |
7407039 |
T |
|
| Q |
218 |
aaattttgcaaatatgttaaggttaaaagttaatatctcaaaattgagagccnnnnnnnnncagctaccactataagaagtaggattgaatcgatggttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7407040 |
aaattttgcaaatatgttaaggttaaaagttaatatctcaaaatcgagagccttttttttccagctaccactataagaagtaggattgaatcgatggttg |
7407139 |
T |
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| Q |
318 |
ctacaattggaatatgacaaacctcttcactggagcagtatcttggattccctatg |
373 |
Q |
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| T |
7407140 |
ctacaattggaatatgacaaacctcttcgctggagaagtatcttggattccctatg |
7407195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 21216364 - 21216115
Alignment:
| Q |
18 |
cctctctccccttatcattttgtgatttgtatggagcttttgtcccatgatattttgaaggcagtggagttgaatcgttagaaggcaatgaacatatctt |
117 |
Q |
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|||||||| ||| ||| |||||| |||| || |||| ||||||||||||||||||||||||||||| ||||||||| || |||| | ||||||||||| |
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| T |
21216364 |
cctctctcgcctaatctttttgtaatttataaggagtttttgtcccatgatattttgaaggcagtgaagttgaatcattggaagtcggtgaacatatctc |
21216265 |
T |
|
| Q |
118 |
gcaatgggacgactctatcccacttattttatgtggataatgttcttttgtttactaaggctaggagatctcaagttctcatggtgtaaggtattttgat |
217 |
Q |
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|||||||| |||||||||||| ||||||| | || || |||||||||||||||||||||||| ||||||| | | | |||||| ||| ||||||| |
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| T |
21216264 |
gcaatgggctgactctatcccatttattttttatgaatgatgttcttttgtttactaaggctacgagatctttggctattatggtggaagagattttgac |
21216165 |
T |
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| Q |
218 |
aaattttgcaaatatgttaaggttaaaagttaatatctcaaaattgagag |
267 |
Q |
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|||||||||||||||||| |||| ||||||||||| ||||||| ||||| |
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| T |
21216164 |
aaattttgcaaatatgttggggttgaaagttaatatttcaaaatcgagag |
21216115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 22912855 - 22912804
Alignment:
| Q |
279 |
cagctaccactataagaagtaggattgaatcgatggttgctacaattggaat |
330 |
Q |
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| T |
22912855 |
cagctaccaccagaagaagtaagattgaatcgatggttgcaacaactggaat |
22912804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 15404237 - 15403936
Alignment:
| Q |
20 |
tctctccccttatcattttgtgatttgtatggagcttttgtcccatgatattttgaaggcagtggagttgaatcgttagaaggcaatgaacatatcttgc |
119 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||| || |||| | ||| ||||||| | |
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| T |
15404237 |
tctctccccttatctttttgtgatttgtataaagtttttgtcccatgatatttt--------tggagttgaatcattggaagtcggtgagcatatctcac |
15404146 |
T |
|
| Q |
120 |
aatgggacgactctatcccacttattttatgtggataatgttcttttgtttactaaggctaggagatctcaagttctcatggtgtaaggtattttgataa |
219 |
Q |
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|||||| ||| ||||||||| ||||||| || |||| ||||||||||||||| |||||||| ||||||||| | | | |||||| |||| ||||||| || |
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| T |
15404145 |
aatgggccgattctatcccatttattttttgcggatgatgttcttttgtttattaaggctacgagatctcaggctattatggtggaagggattttgacaa |
15404046 |
T |
|
| Q |
220 |
attttgcaaatatgtt-aaggttaaaagttaatatctcaaaattgagagccnnnnnnnnncagctaccactataagaagtaggattgaatcgatggttgc |
318 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||| || || |||||||||| | |||||||| |||||||||||||||||| |
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| T |
15404045 |
attttgcaaatatgttggcggtagaaagttaatatctcaaaatcgaaag--ttttcttctcagctaccaccaaaagaagtatgattgaatcgatggttgc |
15403948 |
T |
|
| Q |
319 |
tacaattggaat |
330 |
Q |
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|||| |||||| |
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| T |
15403947 |
aacaactggaat |
15403936 |
T |
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