View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_30 (Length: 386)
Name: NF14572_high_30
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 10659583 - 10659227
Alignment:
| Q |
17 |
gaaaacacagcaatgcgatgctaacaagtagta---aatagaagcaataaattggataagaaagtaattgtgataacattacattagggtgagtgataag |
113 |
Q |
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| T |
10659583 |
gaaaacacagcaatgcgatgctaacaagtagtagtaaatagaagcaataaattggataagaaagtaattgtgataacattacattagggtgagtgataag |
10659484 |
T |
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| Q |
114 |
gcaatcaacaactgaagacagagcgcgagcaacaggcaaagcatccccagcaaacccgccaatagcggctccagttccagtcggcactatcatcacactc |
213 |
Q |
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| T |
10659483 |
acaatcaacaactgaagagagagcacgagcaacaggcaaagcatcaccagcaaacccaccaatagcggctccagttccagtcggcactatcatcacactc |
10659384 |
T |
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| Q |
214 |
gtgtagtctctcttacactgcacccacaaaaacaataacaaattaatagtattttttgtctgcagaagtagtaaaaggaaaaaggagaagagagttacct |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10659383 |
gtgtagtctctcttacactgcacccacaaatacaataacaaattaatactattttttgtctgcagaggtagtaaaaggaaaaaggagaagagagttacct |
10659284 |
T |
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| Q |
314 |
taagagattgtgaagagaaggaacatgaaacggttggtttgcggttgttgaaggatg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10659283 |
taagagattgtgaagagaaggaacatgaaacggttggtttgcgattgttgaaggatg |
10659227 |
T |
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