View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_32 (Length: 371)
Name: NF14572_high_32
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 456538 - 456190
Alignment:
| Q |
20 |
acggagtccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctattggaactattccta |
119 |
Q |
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| T |
456538 |
acggagtccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctattggaactattccta |
456439 |
T |
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| Q |
120 |
atggaaaacagggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttttcacttcatcttcgccttcatcttcaggtaataa |
219 |
Q |
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| T |
456438 |
atggaaaacagggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttttcacttcatcttcgccttcatcttcaggtaataa |
456339 |
T |
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| Q |
220 |
actattttttgcgtaaacattattcgttttagctctgaacaaattttgtcctaggtgcatgtttgatattacattgacttgttgaaatcattcaagtaat |
319 |
Q |
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| T |
456338 |
actattttttgcgtaaacattattcgttttagctctggacaaattttgttctaggtgcacgtttgatattacattgacttgttgaaatcattcaagtaat |
456239 |
T |
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| Q |
320 |
tttacaatgaacttaattttatttttccatcatttgtcttatattattc |
368 |
Q |
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| T |
456238 |
tttacaatgaacttaattttatttttccatcatttgtcttatattattc |
456190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 473666 - 473610
Alignment:
| Q |
129 |
agggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttt |
185 |
Q |
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| T |
473666 |
agggtgcaagtgctttgcttgcttcttgtattgttagatatcaactctacccgtttt |
473610 |
T |
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