View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_36 (Length: 351)
Name: NF14572_high_36
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 29408983 - 29409305
Alignment:
| Q |
18 |
ccatctgggcgacgagaaggaagtacccacttcctggaaacagtaaacaagggaaaaagatctccttcaagtaacaagatatattgcaatacaaaacaac |
117 |
Q |
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| T |
29408983 |
ccatctgggcgacgagaaggaagtacccacttcctggaaacagtaaacaagggaaaaagatctccttcaagtaacaagatatattgcaatacaaaacaac |
29409082 |
T |
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| Q |
118 |
ttaaacacttgataaatagccaaataacttgaaaaactctgatattgaacatacccttgactttcacatataacaccccaatgtaaaaccattgagccac |
217 |
Q |
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| T |
29409083 |
ttaaacacttgataaatagccaaataacttgaaaa-ctctgatactgaacatacccttgactttcacatataacaccccaatgtaaaaccattgagccac |
29409181 |
T |
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| Q |
218 |
tagtatttgaaagctgaatatctacttgcgttgcggctcctgatcctgaagaaccgacattgacctgctccatcgcgtaaaagcaaccgttagctaatgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29409182 |
tagtatttgaaagctgaatatctacttgcgttgcggctcctgatcctgaagaaccgacattgacctgctccatcgcgtaaaagcaactgttagctaatgt |
29409281 |
T |
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| Q |
318 |
attactgatttactatgatttcat |
341 |
Q |
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|||||| ||||||||||||||||| |
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| T |
29409282 |
attactaatttactatgatttcat |
29409305 |
T |
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