View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_high_38 (Length: 348)
Name: NF14572_high_38
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 8344421 - 8344086
Alignment:
| Q |
18 |
agatatctcatttcttcactatctccaccaagctttctaaagcgactagctagacaagtaattggacaaagaaaaacaagtaaaaacaatttagaaatca |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8344421 |
agatgtctcatttcttcactatctccaccaagctttctaaagcgactagctagacaagtaattggacaaagaaaaacaagtaaaaacaatttagaaatca |
8344322 |
T |
|
| Q |
118 |
tgactaccaattgcgtaacactttgtgatatgacaaaaaa----------------------tatatatatgagtgttactgagcttcgatttaaacaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8344321 |
tgactaccaattgcgtaacactttgtgatatgacaaaaaaaaatatttagacataggttatatatatatatgagtgttactgagcttctatttaaacaaa |
8344222 |
T |
|
| Q |
196 |
aatgtgaagttatcccatgtaattcatgctcggtcactagtagctagtgtgctctcaaattgtgaacgaataggttgtgcatgacatttgcatggtctgg |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
8344221 |
aatgtgaagttatcccatgtaatccatgctcggtcactagtagctagtgtgctctcaaattgtgaatgaataggttgtgcatgacatttgcatggtctag |
8344122 |
T |
|
| Q |
296 |
agaaataaagatatgctattataatagcaaatcctt |
331 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |
|
|
| T |
8344121 |
agaaataaagatatactattataatagcacatcctt |
8344086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University