View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_39 (Length: 341)
Name: NF14572_high_39
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 323
Target Start/End: Original strand, 12664216 - 12664526
Alignment:
| Q |
6 |
ccaagaatatatcaacacgcgtccacgctgacgacaaaacccataagccgacttcagtggaccctaccgcaattggatggagatggaaccttatgttaac |
105 |
Q |
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| T |
12664216 |
ccaataatgtatcaacacgcgtccaagctgacgacaaaacccataagccgacttcagtggaccctaccgcaattggatgga------accttatgttaac |
12664309 |
T |
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| Q |
106 |
atcggccccaccaccagcattcacaaccactcagtctcacaatatgtttt--acaaagaaatttgtctttgaaaatgagaaacaagattaaaaacaaatt |
203 |
Q |
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| T |
12664310 |
atcggccccaccaccagcattcacaaccactcaggctcacaatatgttttttacaaagaaatttgtcttttaaaatgagaaacaagattaaaaagaaatc |
12664409 |
T |
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| Q |
204 |
aatatatcatttgttgtagttatgtaaaagtataacacttctttttgcatttcaatgttagtacagcaatgttaacaaaatctctataatgcatatacga |
303 |
Q |
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| T |
12664410 |
aatatatcgtttgttgtagttatgtgaaagtataacacttctttttgcatttcaatgt---tacatcaatgttaacaaaatctctataatgcatatacga |
12664506 |
T |
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| Q |
304 |
agcaaacgatcgtaaggact |
323 |
Q |
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|||||||||||||||||||| |
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| T |
12664507 |
agcaaacgatcgtaaggact |
12664526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 12664539 - 12664592
Alignment:
| Q |
270 |
caatgttaacaaaatctctataatgcatatacgaagcaaacgatcgtaaggact |
323 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |
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| T |
12664539 |
caatgttaacaaaatctctataatgcatatatgaagtaaacgattgtaaggact |
12664592 |
T |
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