View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_40 (Length: 332)
Name: NF14572_high_40
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 13881171 - 13880988
Alignment:
| Q |
20 |
acattcaacatcttcttactttccatgcacagggaatccagaaactacattcacatacttctggataacagactcatgccccttaacagtgaaggaggtg |
119 |
Q |
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| T |
13881171 |
acattcaacattttcttactttccatgcacagggaatccagaaactacattcacatacttctggataacagactcatgccccttaacagtgaaggaggtg |
13881072 |
T |
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| Q |
120 |
atgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcctcaaa |
203 |
Q |
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| T |
13881071 |
atgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcctcaaa |
13880988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 13254564 - 13254381
Alignment:
| Q |
20 |
acattcaacatcttcttactttccatgcacagggaatccagaaactacattcacatacttctggataacagactcatgccccttaacagtgaaggaggtg |
119 |
Q |
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| T |
13254564 |
acattcaatattttccgactttccatgcacggagaatccagaaactgcattcacatacttctggataacagactcatgccccttaacaatgaaggaggtg |
13254465 |
T |
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| Q |
120 |
atgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatggaaatataacattataattttcatcttatcctcaaa |
203 |
Q |
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| T |
13254464 |
atacataggccaccatttgaggttctcagtcagtcttcaaatctgatgaaaatgttacattataattttcatcttatcctcaaa |
13254381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 13880836 - 13880705
Alignment:
| Q |
200 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgcgacattt |
299 |
Q |
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| T |
13880836 |
caaagtagatcaatggtggaggatttgtgaaaaa-tcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgcgacattt |
13880738 |
T |
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| Q |
300 |
accatattactatatcttttgtaagatcgaatt |
332 |
Q |
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| T |
13880737 |
accatattactacatcttttgtaagatcgaatt |
13880705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 14367279 - 14367395
Alignment:
| Q |
32 |
ttcttactttccatgcacagggaatccagaaactacattcacatacttctggataacagactcatgccccttaacagtgaaggaggtgatgcagaggcca |
131 |
Q |
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|||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
14367279 |
ttctgactttccatgcacagggaatccagagactgcgttctcatacttctggataacagactcatgccccttaacagtgaaggaggtgatgcataagcca |
14367378 |
T |
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| Q |
132 |
ccatttgagcttctcag |
148 |
Q |
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| T |
14367379 |
ccatttgaggttctcag |
14367395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 13254045 - 13253990
Alignment:
| Q |
277 |
cttttgtttcctatgcgacatttaccatattactatatcttttgtaagatcgaatt |
332 |
Q |
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| T |
13254045 |
cttttgtttcctatgcgacatttaccatattactacatcttttgtaagatcaaatt |
13253990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 13254277 - 13254239
Alignment:
| Q |
230 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
268 |
Q |
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| T |
13254277 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
13254239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 13878144 - 13878079
Alignment:
| Q |
200 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgca |
266 |
Q |
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| T |
13878144 |
caaagtagatcaatggtggaggatatgtg-ggaaatcaattcaatggtgatgaaattggtggctgca |
13878079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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