View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_high_44 (Length: 312)

Name: NF14572_high_44
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_high_44
NF14572_high_44
[»] chr5 (1 HSPs)
chr5 (1-297)||(4292332-4292624)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 4292624 - 4292332
Alignment:
Q  1 agagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaatccaactcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292624 agagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaatccaactcaa 4292525  T
Q  101 ctcaatctgtatatgtttgtttgatcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatctctaattattttcgatcccact 200  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4292524 ctcaatctgtatatgtttg----atcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatccctaattattttcgatcccact 4292429  T
Q  201 actcaagttgattcatcacagcttaacatgcattttgcaaaaatggggaggatctggttagtttgttaggtcatgagggggccactatatcattttt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292428 actcaagttgattcatcacagcttaacatgcattttgcaaaaatggggaggatctggttagtttgttaggtcatgagggggccactatatcattttt 4292332  T

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