View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_high_49 (Length: 293)
Name: NF14572_high_49
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 26891291 - 26891544
Alignment:
| Q |
21 |
actgtaacctctgtaaatctgttacataagaagaagaatactcattactttcgttttgcgcttcctttcttattacgccatcgtcgttcctttgcggtgt |
120 |
Q |
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| T |
26891291 |
actgtaacctctgtaaatctgttacataaga---agaatactcatcacttttgttttgcgcttcctttcttattacgccatcgtcgttcctttgcggttt |
26891387 |
T |
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| Q |
121 |
ttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccctcaccgttcctttgcttcctacatcaattttatatggaa |
220 |
Q |
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| T |
26891388 |
ttggttgtcgccgttcaatttccgtattttgcagttgtcgttctttttccgtatttcgccgtcaccattcctttgcttcctacatcaattttatatggaa |
26891487 |
T |
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| Q |
221 |
attgggtaattttctctatcgaattaaattaattttctttgtaaattaaattgatttt |
278 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
26891488 |
attgggtaattttctctatcgaattaaattaa-ttactttgtaaattaaaatgatttt |
26891544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 278
Target Start/End: Original strand, 12072865 - 12073048
Alignment:
| Q |
82 |
ttcctttcttattacgccatcgtcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccc |
181 |
Q |
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||||||| |||||||||| |||||||||||||| |||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
12072865 |
ttcctttgttattacgccggcgtcgttcctttgccgtgtttcgttgtcattgttcaattgccgt------ccgttgtcgttcctttgccgtatttcgcc- |
12072957 |
T |
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| Q |
182 |
tcaccgttcctttgcttcctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaattttctttgtaaattaaattgatttt |
278 |
Q |
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| T |
12072958 |
-----gttcctttgcttactacattgattttatatggaaattgggtaaatttctctatggaattcaatcaattttcttt-taaattaaattgatttt |
12073048 |
T |
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