View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_high_5 (Length: 621)

Name: NF14572_high_5
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_high_5
NF14572_high_5
[»] chr4 (12 HSPs)
chr4 (106-604)||(24980349-24980846)
chr4 (14-114)||(24979841-24979941)
chr4 (386-487)||(30848594-30848696)
chr4 (373-461)||(4423180-4423268)
chr4 (388-497)||(4479583-4479690)
chr4 (413-488)||(18995163-18995236)
chr4 (380-439)||(51714232-51714291)
chr4 (372-462)||(12276850-12276940)
chr4 (378-464)||(54235218-54235304)
chr4 (387-492)||(48514541-48514644)
chr4 (408-464)||(24788664-24788720)
chr4 (408-464)||(24819540-24819596)
[»] chr5 (18 HSPs)
chr5 (372-502)||(34252708-34252837)
chr5 (373-502)||(25467097-25467225)
chr5 (373-488)||(9956489-9956603)
chr5 (373-488)||(33669918-33670032)
chr5 (373-464)||(968273-968364)
chr5 (413-461)||(17858199-17858247)
chr5 (373-502)||(2424429-2424557)
chr5 (373-453)||(38958052-38958132)
chr5 (371-486)||(16500564-16500678)
chr5 (388-487)||(39015007-39015105)
chr5 (386-460)||(20185317-20185391)
chr5 (373-487)||(39030569-39030682)
chr5 (387-488)||(5727721-5727820)
chr5 (387-443)||(12619668-12619724)
chr5 (387-502)||(17555949-17556064)
chr5 (375-426)||(9956564-9956615)
chr5 (387-464)||(30293404-30293481)
chr5 (471-503)||(25467096-25467128)
[»] chr6 (14 HSPs)
chr6 (373-502)||(31323805-31323933)
chr6 (371-502)||(14446687-14446817)
chr6 (387-464)||(33822316-33822393)
chr6 (373-488)||(30531183-30531297)
chr6 (372-487)||(34553120-34553236)
chr6 (371-464)||(2282426-2282519)
chr6 (410-486)||(9829898-9829973)
chr6 (379-502)||(28596066-28596188)
chr6 (373-456)||(9675753-9675836)
chr6 (371-461)||(35003790-35003880)
chr6 (383-452)||(14222833-14222902)
chr6 (383-487)||(13422138-13422241)
chr6 (432-501)||(8437824-8437892)
chr6 (432-460)||(14222807-14222835)
[»] chr3 (16 HSPs)
chr3 (377-456)||(18364204-18364282)
chr3 (380-489)||(32221468-32221576)
chr3 (378-488)||(47783083-47783192)
chr3 (380-461)||(40955809-40955890)
chr3 (383-479)||(5307341-5307436)
chr3 (372-488)||(26914440-26914554)
chr3 (371-461)||(15282628-15282718)
chr3 (386-464)||(31280183-31280261)
chr3 (388-502)||(37330917-37331031)
chr3 (387-458)||(11256559-11256630)
chr3 (372-426)||(21383693-21383747)
chr3 (388-464)||(26104246-26104322)
chr3 (421-487)||(40905808-40905873)
chr3 (372-424)||(30818031-30818083)
chr3 (408-460)||(45610466-45610518)
chr3 (388-464)||(46733045-46733121)
[»] chr2 (22 HSPs)
chr2 (373-488)||(10459271-10459385)
chr2 (386-501)||(2949034-2949148)
chr2 (375-488)||(43398831-43398943)
chr2 (372-502)||(944762-944891)
chr2 (386-486)||(25089919-25090017)
chr2 (372-464)||(38935353-38935445)
chr2 (397-492)||(7932744-7932838)
chr2 (373-464)||(43042194-43042285)
chr2 (371-464)||(11386337-11386430)
chr2 (376-488)||(35311179-35311290)
chr2 (374-444)||(16564424-16564494)
chr2 (432-502)||(17437176-17437245)
chr2 (373-487)||(24037575-24037688)
chr2 (418-464)||(43465485-43465531)
chr2 (380-488)||(31469076-31469183)
chr2 (372-492)||(41374519-41374638)
chr2 (380-442)||(41099028-41099090)
chr2 (434-487)||(2884262-2884314)
chr2 (373-488)||(19924309-19924420)
chr2 (410-487)||(41912105-41912182)
chr2 (410-452)||(1862683-1862725)
chr2 (379-464)||(16180432-16180517)
[»] chr1 (14 HSPs)
chr1 (372-503)||(47543589-47543719)
chr1 (371-464)||(30693363-30693456)
chr1 (373-484)||(31784745-31784854)
chr1 (373-502)||(37918905-37919033)
chr1 (384-464)||(3693989-3694069)
chr1 (373-487)||(3739805-3739918)
chr1 (410-496)||(5056322-5056407)
chr1 (410-495)||(6061488-6061572)
chr1 (373-487)||(19758261-19758375)
chr1 (386-454)||(27527709-27527777)
chr1 (379-457)||(26265776-26265854)
chr1 (388-444)||(602599-602656)
chr1 (412-464)||(10498356-10498408)
chr1 (466-502)||(31784818-31784854)
[»] chr7 (15 HSPs)
chr7 (369-463)||(3769740-3769834)
chr7 (376-488)||(37926338-37926450)
chr7 (387-491)||(44816469-44816572)
chr7 (387-487)||(14773476-14773576)
chr7 (387-487)||(15223928-15224028)
chr7 (386-487)||(18731994-18732093)
chr7 (372-481)||(16866391-16866499)
chr7 (387-464)||(36035274-36035351)
chr7 (412-495)||(5026138-5026220)
chr7 (432-502)||(6803298-6803367)
chr7 (378-464)||(30794469-30794555)
chr7 (387-461)||(32652411-32652485)
chr7 (387-428)||(3719941-3719982)
chr7 (388-464)||(23971191-23971267)
chr7 (432-484)||(34515855-34515906)
[»] chr8 (11 HSPs)
chr8 (410-464)||(13209992-13210046)
chr8 (379-464)||(11114264-11114349)
chr8 (394-464)||(8777797-8777867)
chr8 (380-464)||(29797938-29798025)
chr8 (388-461)||(33557781-33557854)
chr8 (380-443)||(37627908-37627971)
chr8 (414-464)||(11196249-11196299)
chr8 (372-493)||(9548040-9548159)
chr8 (373-481)||(15114629-15114737)
chr8 (372-437)||(32729715-32729780)
chr8 (383-487)||(35901036-35901139)
[»] scaffold0027 (2 HSPs)
scaffold0027 (388-488)||(13179-13278)
scaffold0027 (373-426)||(13165-13218)
[»] scaffold0034 (1 HSPs)
scaffold0034 (388-487)||(94952-95050)
[»] scaffold0009 (1 HSPs)
scaffold0009 (410-461)||(51249-51300)


Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 106 - 604
Target Start/End: Original strand, 24980349 - 24980846
Alignment:
Q  106 ttttctttttgatcttgaagtgaataacttgaaaataagattaaattgttaagggtaaatttgtagtaggaaaactattcacctaaaaaacagttagttt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  24980349 ttttctttttgatcttgaagtgaataacttgaaaataagattaaattgttaagggtaaatttgtagtaggaaaaatattcacctaaaaaacagttaattt 24980448  T
Q  206 tccatattccacataatcatgatgtaaatttaaatttaattttaggaaagagttatgnnnnnnnnagaggagaaaagaattttcttaagcgtaattttgt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  24980449 tccatattccacataatcatgatgtaaatttaaatttaattttaggaaagagttatgttttttttagaggagaaaagaattttcttaagcgtaattttgt 24980548  T
Q  306 ctagaaaaatatgtaaccaaaagatagttactcaataattaatttaagttgtctttaaataatggtatactccctccgttccaaaatgtaagtaaaaatg 405  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24980549 ctagaaaaatatgtaaccaaaagatagttactcgataattaatttaagttgtctttaaataatggtatactccctccgttctaaaatgtaagtaaaaatg 24980648  T
Q  406 gattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacagagagagtaaat 505  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24980649 gatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgtt-gacaaatttttgcttacattttgagacagagagagtaaat 24980747  T
Q  506 tattagataaaagtaaatgtcaaatcttgatctccaatcaaaattattatattttttgtattaatctttcagttcttagtagaaatgatccttgataat 604  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24980748 tattagataaaagcgaatgtcaaatcttgatctccaatcaaaattattatattttttgtattaatctttcagttcttagtagaaatgatccttgataat 24980846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 24979841 - 24979941
Alignment:
Q  14 caaaggagaaagggtcacgcttttctggagttagttaatctgccgagagnnnnnnncggttatggaggagaaagagaatttcggtggaacatttttcttt 113  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  24979841 caaaggagaaagggtcacgctttgccggagttagttaatctgccgagagaaaaaaacggttatggaggagaaagagaatttccgtggaacatttttcttt 24979940  T
Q  114 t 114  Q
    |    
T  24979941 t 24979941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 386 - 487
Target Start/End: Original strand, 30848594 - 30848696
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctga--cacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttaca 483  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |   ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  30848594 ccaaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgtt-gaccaatttttgcttaca 30848692  T
Q  484 tttt 487  Q
    ||||    
T  30848693 tttt 30848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 4423268 - 4423180
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||| |||| || |||||||||||| |||||||||| || |||||||||||||| ||  ||||||||||||  ||||| ||||||||||    
T  4423268 tacttcctctgtcccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaattttt 4423180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 388 - 497
Target Start/End: Original strand, 4479583 - 4479690
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||| ||| |||||||| |||| ||||||| |||||||||  | ||||||||||  ||||| ||||||||||||| ||  ||||||| ||| ||||||    
T  4479583 aaaatgcaagcaaaaatgg-ttaatataagttaatgtatctggtataaattttgaatcaaatatattaatttttgtt-gatcaatttttacttgcatttt 4479680  T
Q  488 gagacagaga 497  Q
    ||||| ||||    
T  4479681 gagacggaga 4479690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 18995163 - 18995236
Alignment:
Q  413 ataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttg 488  Q
    |||||||||||||||||  ||||||||||||| ||||||||||| |||| ||  || ||| |||||||||||||||    
T  18995163 ataagttgatgtatctgt-acaaattttgaaccaaatacattaacttttatt-aactaatgtttgcttacattttg 18995236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 51714232 - 51714291
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattt 439  Q
    ||||| |||||||||||| ||||||||||  |||||||||||| ||||||  ||||||||    
T  51714232 tccgtcccaaaatgtaagcaaaaatggatcgacataagttgatttatctggtacaaattt 51714291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 12276940 - 12276850
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttg 462  Q
    ||||||| ||| ||||||||| |||| |||||| | | ||||||||||||||||| |   | ||||||||||  ||||||||||| |||||    
T  12276940 atactccttccattccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttg 12276850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 54235218 - 54235304
Alignment:
Q  378 cctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||| ||| ||||||||||| |||||||  | || |||| ||||||||| |   ||||||||||||| ||||||||||| |||||||    
T  54235218 cctctgtttcaaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgtt 54235304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 492
Target Start/End: Original strand, 48514541 - 48514644
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattt 486  Q
    |||||| ||||||||||||| |||||| |||| ||||||| | | | || ||||| || ||||||||||| ||||||| ||| |||||||| ||| |||     
T  48514541 caaaatataagtaaaaatgggttaacacaagtagatgtat-taataaaatttttggaccaaatacattaacttttgtt-gactaatttttgtttatattg 48514638  T
Q  487 tgagac 492  Q
    ||||||    
T  48514639 tgagac 48514644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 464
Target Start/End: Complemental strand, 24788720 - 24788664
Alignment:
Q  408 ttaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||| |||||||||||||| ||| ||||||||  ||  |||||||||||||||||||    
T  24788720 ttaatataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgtt 24788664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 464
Target Start/End: Original strand, 24819540 - 24819596
Alignment:
Q  408 ttaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||| |||||||||||||| ||| ||||||||  ||  |||||||||||||||||||    
T  24819540 ttaatataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgtt 24819596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 372 - 502
Target Start/End: Complemental strand, 34252837 - 34252708
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||| || || || ||||||||||| ||||||||||| ||||||| ||| ||    
T  34252837 atactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgtt-gaccaa 34252739  T
Q  472 tttttgcttacattttgagacagagagagta 502  Q
    ||||||||||||||||| ||| ||| |||||    
T  34252738 tttttgcttacattttgggacggagggagta 34252708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 373 - 502
Target Start/End: Original strand, 25467097 - 25467225
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    ||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||| | ||||||||| ||||  ||||  |||    
T  25467097 tactctctccgtctcaaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaactttt-atcgatcaat 25467195  T
Q  473 ttttgcttacattttgagacagagagagta 502  Q
    |||| |||| |||||| || |||| |||||    
T  25467196 ttttccttagattttgggatagagggagta 25467225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 9956489 - 9956603
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||| ||| | ||||||||||||||||||||| | |||||| |||||||||||||  | ||||||||||  ||||||||||| |||||||  || |||    
T  9956489 tactccatccatcccaaaatgtaagtaaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaacttttgtt-aaccaat 9956587  T
Q  473 ttttgcttacattttg 488  Q
    |||| |||||||||||    
T  9956588 ttttacttacattttg 9956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 33669918 - 33670032
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||| ||| | |||||||||||| |||||||| | ||||||||||  ||||||||  ||||||||| ||| ||||||||||| |||| || ||| |||    
T  33669918 tactccatccatcccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttt-tttgaccaat 33670016  T
Q  473 ttttgcttacattttg 488  Q
    ||||||||||||||||    
T  33670017 ttttgcttacattttg 33670032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 464
Target Start/End: Original strand, 968273 - 968364
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||| ||||||| |||||||||||||||| ||| | ||  ||||||||||||| ||  ||||||||||||| ||||| |||||||||||||    
T  968273 tactctctccgtttcaaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaatatattaatttttgtt 968364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 17858247 - 17858199
Alignment:
Q  413 ataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  17858247 ataagttgatgtatctgatacaaattttgaaccaaatacattaattttt 17858199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 502
Target Start/End: Original strand, 2424429 - 2424557
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||||| | ||||| |||| ||||||   |||||||||| |||||||| ||  ||||||||||||| ||||||||||| ||||  ||||| |||    
T  2424429 tactccctccgtgctaaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaactttt-atcgaccaat 2424527  T
Q  473 ttttgcttacattttgagacagagagagta 502  Q
    ||||| ||| | |||| ||  |||||||||    
T  2424528 ttttgtttataatttgggatggagagagta 2424557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 38958052 - 38958132
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacat 453  Q
    |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||||| ||   ||||||||| || ||||||||    
T  38958052 tacttcctccgttccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacat 38958132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 371 - 486
Target Start/End: Complemental strand, 16500678 - 16500564
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaa 470  Q
    |||||||| |||||   ||||| |||||||||||  |  ||||||| ||||||||||||    ||||||||||| || |||||||||||||||| ||  |    
T  16500678 tatactccatccgtcttaaaatataagtaaaaattaaacaacataaattgatgtatctggattaaattttgaaccaattacattaatttttgtt-gaaca 16500580  T
Q  471 atttttgcttacattt 486  Q
    ||||||||||||||||    
T  16500579 atttttgcttacattt 16500564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 487
Target Start/End: Complemental strand, 39015105 - 39015007
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    ||||||||||||||||||||| ||  ||||||||||| || |  ||||  ||||||| ||||| ||||||||| ||| ||| |||||||| |||||||||    
T  39015105 aaaatgtaagtaaaaatggatcaatgtaagttgatgtgtccggtacaaggtttgaaccaaatatattaattttagtt-gactaatttttgtttacatttt 39015007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 460
Target Start/End: Original strand, 20185317 - 20185391
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttt 460  Q
    ||||||||||| ||||||||  |||| |||||| ||||||| |   ||||||||||||| |||||||||||||||    
T  20185317 ccaaaatgtaaataaaaatgagttaatataagtcgatgtattttgtacaaattttgaaccaaatacattaatttt 20185391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 487
Target Start/End: Complemental strand, 39030682 - 39030569
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||| | ||||||| |||| ||||||   | |||| ||||| |||||| ||  ||||||||| ||| ||||||||||| ||||||| ||| |||    
T  39030682 tactccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgtt-gaccaat 39030584  T
Q  473 ttttgcttacatttt 487  Q
    ||||||||| |||||    
T  39030583 ttttgcttatatttt 39030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 488
Target Start/End: Complemental strand, 5727820 - 5727721
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattt 486  Q
    |||||||||||||||||| | | |  |||||||||||||||||  ||||||||| |||  |||| |||||||||| || ||| ||||||| |||||||||    
T  5727820 caaaatgtaagtaaaaataggtcacaataagttgatgtatctggtacaaattttaaac-caatatattaatttttatt-gaccaatttttacttacattt 5727723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 12619724 - 12619668
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaa 443  Q
    |||||| |||| |||||||||| ||||||||||||||||| ||| | ||||||||||    
T  12619724 caaaatataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaa 12619668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 502
Target Start/End: Original strand, 17555949 - 17556064
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaa-tttttgttcgacaaatttttgcttacatt 485  Q
    |||||| ||||||||||||  | ||| ||||||||| ||| ||| | ||||||||||| | ||||||||| ||||||||| || ||||||| |||| |||    
T  17555949 caaaatataagtaaaaatgagtcaacgtaagttgatatatttgatataaattttgaaccacatacattaactttttgttc-accaatttttacttatatt 17556047  T
Q  486 ttgagacagagagagta 502  Q
    || ||||  ||||||||    
T  17556048 ttaagacgaagagagta 17556064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 9956615 - 9956564
Alignment:
Q  375 ctccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtat 426  Q
    |||||||||| ||||||||||||||||||| | |||||| ||||| ||||||    
T  9956615 ctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtat 9956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 30293481 - 30293404
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| ||||||||||||  | |||||| |||||||||| ||| | ||||||||||  ||||||||| | |||||||    
T  30293481 caaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgtt 30293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 503
Target Start/End: Complemental strand, 25467128 - 25467096
Alignment:
Q  471 atttttgcttacattttgagacagagagagtaa 503  Q
    |||||||||||||||||||||| ||||||||||    
T  25467128 atttttgcttacattttgagacggagagagtaa 25467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 373 - 502
Target Start/End: Complemental strand, 31323933 - 31323805
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    ||||||||| || |||||||||||| |||||| | | ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||    
T  31323933 tactccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgtt-gaccaat 31323835  T
Q  473 ttttgcttacattttgagacagagagagta 502  Q
    |||||||||||||||| | ||||| |||||    
T  31323834 ttttgcttacattttgggtcagagggagta 31323805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 371 - 502
Target Start/End: Complemental strand, 14446817 - 14446687
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaa 470  Q
    |||||||||||||| ||||||||||||||||||| | | ||  ||||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||| |    
T  14446817 tatactccctccgtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttgtt-gacca 14446719  T
Q  471 atttttgcttacattttgagacagagagagta 502  Q
    | |||||||||||||||| |||| || |||||    
T  14446718 acttttgcttacattttgggacaaagggagta 14446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 33822393 - 33822316
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||    
T  33822393 caaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgtt 33822316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 488
Target Start/End: Complemental strand, 30531297 - 30531183
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||||| |||||||||||| |||||||  | ||||||||||||||||| ||  ||||| ||||||| |||||||| || || |||| |||   |    
T  30531297 tactccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgtt-gacccgt 30531199  T
Q  473 ttttgcttacattttg 488  Q
    ||||||||||||||||    
T  30531198 ttttgcttacattttg 30531183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 372 - 487
Target Start/End: Original strand, 34553120 - 34553236
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataa--gttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgaca 469  Q
    |||||||||| || | ||||||||||||||||| | | | ||||   |||||||||||| |||||||||||||| |||||||||| | |||| || ||      
T  34553120 atactccctcggtcctaaaatgtaagtaaaaattggtcagcatatatgttgatgtatctaacacaaattttgaagaaaatacattgacttttatt-gaac 34553218  T
Q  470 aatttttgcttacatttt 487  Q
    ||||||||||||||||||    
T  34553219 aatttttgcttacatttt 34553236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 2282519 - 2282426
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| ||||||| |||| || |||| ||||||   ||||||||| ||||||||| ||| |||| |||||||| ||||||||||| |||||||    
T  2282519 tatacttcctccgtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgtt 2282426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 9829973 - 9829898
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattt 486  Q
    ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  9829973 aacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgtt-gactaatttttacttatattt 9829898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 502
Target Start/End: Complemental strand, 28596188 - 28596066
Alignment:
Q  379 ctccgttccaaaatgtaagtaaaaat-ggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttg 477  Q
    |||||| | |||||||||| |||||| || |||| |||| ||||||||||| | |  | |||||||| ||||| ||||||||||||| ||| |||||||     
T  28596188 ctccgtcctaaaatgtaagaaaaaataggtttaatataaattgatgtatctaatatta-ttttgaaccaaatatattaatttttgtt-gaccaattttta 28596091  T
Q  478 cttacattttgagacagagagagta 502  Q
    |||||||||||| || |||||||||    
T  28596090 cttacattttgaaacggagagagta 28596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 456
Target Start/End: Original strand, 9675753 - 9675836
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaa 456  Q
    ||||||||||||  ||||||||||| |||||| | | |||||||||||||| |||||  |||||||||| |  |||||||||||    
T  9675753 tactccctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttgtattaaatacattaa 9675836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 461
Target Start/End: Complemental strand, 35003880 - 35003790
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||||||| |||||   |||||||||| ||||||| || ||||||||||||| ||| |   ||||||||||||  ||||||||||||||||    
T  35003880 tatactccatccgtcttaaaatgtaagcaaaaatgaatcaacataagttgatatattttgtacaaattttgaatcaaatacattaattttt 35003790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 14222902 - 14222833
Alignment:
Q  383 gttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaataca 452  Q
    ||||||||||||||| |||||||| | ||||||||||||||||| ||    |||||||||| ||||||||    
T  14222902 gttccaaaatgtaagcaaaaatgggtcaacataagttgatgtatatggtgtaaattttgaataaaataca 14222833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 487
Target Start/End: Complemental strand, 13422241 - 13422138
Alignment:
Q  383 gttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttac 482  Q
    |||||||||||||| ||||||| | ||||||||| || || ||||||  | ||||||| ||  |||||||||||||||| || ||  ||||||| |||||    
T  13422241 gttccaaaatgtaaataaaaataggttaacataaattaatatatctggtataaattttaaatcaaatacattaatttttatt-gagcaatttttacttac 13422143  T
Q  483 atttt 487  Q
    |||||    
T  13422142 atttt 13422138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 501
Target Start/End: Original strand, 8437824 - 8437892
Alignment:
Q  432 acaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacagagagagt 501  Q
    ||||||||||||  ||||||||||||||||||| ||| || |||| |||| |||||||||| || |||||    
T  8437824 acaaattttgaatcaaatacattaatttttgtt-gactaaattttacttatattttgagacggatagagt 8437892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 14222835 - 14222807
Alignment:
Q  432 acaaattttgaacaaaatacattaatttt 460  Q
    |||||||||||||||||||||||||||||    
T  14222835 acaaattttgaacaaaatacattaatttt 14222807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 18364282 - 18364204
Alignment:
Q  377 ccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaa 456  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364282 ccctccgttccaaaatgtaagcaaaaatgg-ttaacataagttgatgtatctgacacaaattttgaacaaaatacattaa 18364204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 32221468 - 32221576
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgct 479  Q
    ||||| |||||||||||| |||||| ||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||| ||||||| ||| ||||||||||    
T  32221468 tccgtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgtt-gactaatttttgct 32221566  T
Q  480 tacattttga 489  Q
    ||||||||||    
T  32221567 tacattttga 32221576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 488
Target Start/End: Complemental strand, 47783192 - 47783083
Alignment:
Q  378 cctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttg 477  Q
    ||||||||||||||| |||| |||||||  | ||||||||  ||||||||||| ||||||||||||| ||||||||||| |||| || ||| |||||||     
T  47783192 cctccgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttt-tttgaccaattttta 47783094  T
Q  478 cttacattttg 488  Q
    |||||||||||    
T  47783093 cttacattttg 47783083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 40955890 - 40955809
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||||| |||||||||||| ||||||  |||| ||||||| |||||| ||| ||||||||||||| ||||||| ||||||||    
T  40955890 tccgtttcaaaatgtaagttaaaatgtgttaaaataagttaatgtatatgatacaaattttgaactaaatacaataattttt 40955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 479
Target Start/End: Complemental strand, 5307436 - 5307341
Alignment:
Q  383 gttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgct 479  Q
    ||||||||||||||  ||||||||||  ||||| |||||||||||| | ||||||||| ||| |||| ||||||||||| || ||| ||||||||||    
T  5307436 gttccaaaatgtaaacaaaaatggatctacatacgttgatgtatctaatacaaattttaaacgaaatccattaatttttatt-gaccaatttttgct 5307341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 488
Target Start/End: Original strand, 26914440 - 26914554
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    |||||| ||| || |||||||||||| |||||||||  ||| ||||||||||||| |   | ||||||||||| | ||||||||||||||||| ||  ||    
T  26914440 atactcactctgtcccaaaatgtaagcaaaaatggac-aacttaagttgatgtatttagtataaattttgaaccacatacattaatttttgtt-gatcaa 26914537  T
Q  472 tttttgcttacattttg 488  Q
    |||||||||||||||||    
T  26914538 tttttgcttacattttg 26914554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 371 - 461
Target Start/End: Original strand, 15282628 - 15282718
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||||| || |||| ||||||| |||  |||||||||| |||||||||||||| |||||| ||||||||| ||  ||||||||||| ||||    
T  15282628 tatacttccgccgtcccaaaatataaacaaaaatggatcaacataagttgatgaatctgatacaaattttaaatcaaatacattaactttt 15282718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 31280261 - 31280183
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| ||||| |||||||||| ||||||| || |||||| ||  ||||||||||||| ||||||||||| |||||||    
T  31280261 ccaaaaggtaaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgtt 31280183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 502
Target Start/End: Complemental strand, 37331031 - 37330917
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||||||| |||||||| ||||||||| |||| ||||||   ||||||||||||| | ||||||||| |||   |  | ||||||||| ||| |||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaaccatatacattaaatttatattaataaatttttgtttatatttt 37330932  T
Q  488 gagacagagagagta 502  Q
    | |||||||||||||    
T  37330931 gggacagagagagta 37330917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 458
Target Start/End: Complemental strand, 11256630 - 11256559
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatt 458  Q
    |||||| |||| ||||||| ||||||||| |||||||||| ||| |||||||||| |  |||||||||||||    
T  11256630 caaaatataagcaaaaatgaattaacatatgttgatgtatttgatacaaattttggatcaaatacattaatt 11256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 21383693 - 21383747
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtat 426  Q
    |||||||||||||| |||||||||||||||||||| ||| | |||||| ||||||    
T  21383693 atactccctccgtttcaaaatgtaagtaaaaatggtttagcgtaagttaatgtat 21383747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 464
Target Start/End: Complemental strand, 26104322 - 26104246
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||||| |||||||  | ||||||| ||||| | | ||| ||||||||||||| |||||||||| ||||||||    
T  26104322 aaaatgtaagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacattagtttttgtt 26104246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 40905873 - 40905808
Alignment:
Q  421 atgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||||||  | ||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||||||    
T  40905873 atgtatctggtataaattttgaaccaaataaattaacttttgtt-gaccaatttttgcttacatttt 40905808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 30818083 - 30818031
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgt 424  Q
    ||||||||||  ||||||||| |||  |||||||||| |||||||||||||||    
T  30818083 atactccctcaattccaaaatataaacaaaaatggatcaacataagttgatgt 30818031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 45610518 - 45610466
Alignment:
Q  408 ttaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttt 460  Q
    |||||||||||||||| || ||| | |||| |||||| |||||||||||||||    
T  45610518 ttaacataagttgatgaatttgatataaatcttgaaccaaatacattaatttt 45610466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 464
Target Start/End: Complemental strand, 46733121 - 46733045
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||||| ||||||   | ||| |||| ||||| || ||| ||||||||||||  |||||||||||||||||||    
T  46733121 aaaatgtaagcaaaaataagtcaacgtaagctgatgcatttgatacaaattttgaatcaaatacattaatttttgtt 46733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 373 - 488
Target Start/End: Complemental strand, 10459385 - 10459271
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||||| |||||||||||| ||| || | | |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||| ||| |||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgtt-gaccaat 10459287  T
Q  473 ttttgcttacattttg 488  Q
    ||||||||| ||||||    
T  10459286 ttttgcttatattttg 10459271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 2949148 - 2949034
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatt 485  Q
    ||||||||||||||||||| | | ||||||| ||||||||| |||||  |||||||||||||||||||||  |||||||  || ||||||||||||||||    
T  2949148 ccaaaatgtaagtaaaaataggtcaacataaattgatgtatatgacattaattttgaacaaaatacattagcttttgtt-aaccaatttttgcttacatt 2949050  T
Q  486 ttgagacagagagagt 501  Q
    ||||||| ||| ||||    
T  2949049 ttgagacggagggagt 2949034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 375 - 488
Target Start/End: Original strand, 43398831 - 43398943
Alignment:
Q  375 ctccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaattt 474  Q
    ||||||| |||| ||||||||||||||||||| | || |||||||||||||| ||  ||||||||||||| ||||||||||| |||||||  ||||||||    
T  43398831 ctccctctgttctaaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgtt-aacaaattt 43398929  T
Q  475 ttgcttacattttg 488  Q
    ||| ||| ||||||    
T  43398930 ttgtttagattttg 43398943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 502
Target Start/End: Complemental strand, 944891 - 944762
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    |||||||||||||  ||||||||||||||||||   | ||||||||||||||||| ||  ||||||||||||| ||||||||||| |||| || ||   |    
T  944891 atactccctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttatt-gatcga 944793  T
Q  472 tttttgcttacattttgagacagagagagta 502  Q
    |||||||||| ||||||| || || ||||||    
T  944792 tttttgcttatattttgaaacggaaagagta 944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 25089919 - 25090017
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatt 485  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||  ||||| || || |||||||  || |||||||||||| |||    
T  25089919 ccaaaatgtaagaaaaaatggattaacataagttgttgtatttgatacaaattttgaagcaaatatatgaagttttgtt--accaatttttgcttatatt 25090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 38935353 - 38935445
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| ||| || ||||||| |||| |||||||  | ||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||    
T  38935353 atactcactctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgtt 38935445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 397 - 492
Target Start/End: Complemental strand, 7932838 - 7932744
Alignment:
Q  397 gtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagac 492  Q
    |||||||||  | ||||||||||||||||||||| | ||||||||||| |||||| |||| ||||||| ||| |||||||||||| ||||| ||||    
T  7932838 gtaaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgtt-gactaatttttgcttatattttaagac 7932744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 43042285 - 43042194
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||||| | |||||||||||| |||||||  | |||| |||||||||||||||| | |||||||||||  |||||||||| |||||||    
T  43042285 tactccctccatcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgtt 43042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 11386430 - 11386337
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||| || |||| |||||| |||| |||| | ||| ||||||||||||||||| ||| ||||||||||||  ||||| |||||||||||||    
T  11386430 tatactctcttcgtttcaaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgtt 11386337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 35311179 - 35311290
Alignment:
Q  376 tccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgac-aaattt 474  Q
    ||||| |||| ||||||||||| |||||||| | |||||||||| || |||||   ||||||||||||| ||||||||||| ||||||| ||| ||||||    
T  35311179 tcccttcgtttcaaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgtt-gactaaattt 35311276  T
Q  475 ttgcttacattttg 488  Q
    || |||||||||||    
T  35311277 tttcttacattttg 35311290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 374 - 444
Target Start/End: Complemental strand, 16564494 - 16564424
Alignment:
Q  374 actccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaac 444  Q
    ||||| ||||| ||||||||||||||||||||  | ||||||||||||||||| ||  |||||||||||||    
T  16564494 actccttccgtcccaaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaac 16564424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 17437176 - 17437245
Alignment:
Q  432 acaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacagagagagta 502  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||| ||| ||| |||||    
T  17437176 acaaattttgaactaaatacattaatttttgtt-gacaaatttttgtttatattttgggacggagggagta 17437245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 487
Target Start/End: Original strand, 24037575 - 24037688
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||| ||||| | |||||||||| |||||||  | ||||||||||||| ||| ||  |||||||||||||||||||||| || || || |||||  ||    
T  24037575 tactccatccgtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatg-tcgacccat 24037673  T
Q  473 ttttgcttacatttt 487  Q
    |||||||||| ||||    
T  24037674 ttttgcttacttttt 24037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 43465485 - 43465531
Alignment:
Q  418 ttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  43465485 ttgatgtatctgacataaattttgaacaaaatacattaacttttgtt 43465531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 488
Target Start/End: Complemental strand, 31469183 - 31469076
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgct 479  Q
    ||||| ||||||| |||| |||||| | | |||  ||||| |||||| ||| ||||||||| ||| ||||||||||| ||||||| ||| ||||||||||    
T  31469183 tccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgtt-gaccaatttttgct 31469085  T
Q  480 tacattttg 488  Q
    || ||||||    
T  31469084 tatattttg 31469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 492
Target Start/End: Original strand, 41374519 - 41374638
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    ||||||| | |||||||||||||||| |||||||  | |||| |||||||||||| ||  | ||| ||||||  ||||||||||| ||| ||| ||| ||    
T  41374519 atactccttacgttccaaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgtt-gactaa 41374617  T
Q  472 tttttgcttacattttgagac 492  Q
    ||||| |||| ||||||||||    
T  41374618 tttttacttatattttgagac 41374638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 41099090 - 41099028
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttga 442  Q
    |||||||||||||||||| |||||||| | |||||||||| |||||| ||  |||||||||||    
T  41099090 tccgttccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 2884314 - 2884262
Alignment:
Q  434 aaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||    
T  2884314 aaattttgaaccaaatacattaatttttgtt-gacaaatttttacttatatttt 2884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 488
Target Start/End: Complemental strand, 19924420 - 19924309
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||||| ||||| |||||||||   ||| | ||| ||||||||||||| ||  ||||||||||||| | ||||||||| |||| || ||| ||     
T  19924420 tactccctccgtcccaaattgtaagtaa---tgggtcaacgtaagttgatgtatttggtacaaattttgaaccatatacattaacttttatt-gactaac 19924325  T
Q  473 ttttgcttacattttg 488  Q
    |||| |||||||||||    
T  19924324 ttttacttacattttg 19924309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 41912105 - 41912182
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||||||| || || |||  ||||||||||||| | |||||||||||||||||  |||| |||||||||| |||||    
T  41912105 aacataagttaatctagctggtacaaattttgaaccagatacattaatttttgttgaacaattttttgcttatatttt 41912182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 1862683 - 1862725
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaataca 452  Q
    ||||||||||||||||| ||||||||||||||||  |||||||    
T  1862683 aacataagttgatgtatttgacacaaattttgaatcaaataca 1862725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 16180432 - 16180517
Alignment:
Q  379 ctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| |||||||||||| ||||||   | ||||||| |||||||||   | | ||||||||||| ||||||||||| |||||||    
T  16180432 ctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgtt 16180517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 372 - 503
Target Start/End: Complemental strand, 47543719 - 47543589
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    ||||||||||||| ||||||||||||  |||||| | || | ||||||||||||| ||  ||||||||||||| |||| |||||||||||||| ||| ||    
T  47543719 atactccctccgtcccaaaatgtaagccaaaatgaaatagcgtaagttgatgtatttggtacaaattttgaaccaaattcattaatttttgtt-gaccaa 47543621  T
Q  472 tttttgcttacattttgagacagagagagtaa 503  Q
    |||||  ||| ||||| |||||||| ||||||    
T  47543620 ttttttattatattttaagacagagggagtaa 47543589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 30693456 - 30693363
Alignment:
Q  371 tatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||| |||||| ||||||||||||||||||| || |||||||  |||||||| ||  ||||||||||||  |||||||||||||||||||    
T  30693456 tatactccttccgtttcaaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgtt 30693363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 373 - 484
Target Start/End: Complemental strand, 31784854 - 31784745
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    ||||||||| || |||||||||||| ||||||   | ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||  ||  ||    
T  31784854 tactccctctgtcccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatacattcatttctgtt--accgat 31784757  T
Q  473 ttttgcttacat 484  Q
    ||||||||||||    
T  31784756 ttttgcttacat 31784745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 502
Target Start/End: Original strand, 37918905 - 37919033
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||  ||| |||||||||||| ||||||| || ||||||||||||||||| ||| | ||||||| ||| ||||||||| | ||||||| |||||||    
T  37918905 tactcccatcgtcccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgtt-gacaaat 37919003  T
Q  473 ttttgcttacattttgagacagagagagta 502  Q
    ||| ||||| | ||| |||| || ||||||    
T  37919004 tttcgcttatagtttaagacggatagagta 37919033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 464
Target Start/End: Original strand, 3693989 - 3694069
Alignment:
Q  384 ttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||||||||||| |||||  | ||||||| ||||||||| | | ||||||||||||  |||||||||||||||||||    
T  3693989 ttccaaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgtt 3694069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 487
Target Start/End: Original strand, 3739805 - 3739918
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaat 472  Q
    |||||||||||| ||||||| |||| |||||| | | |||  ||||| |||||| ||  ||||||||| ||| ||||||||||| ||||||| ||| |||    
T  3739805 tactccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgtt-gaccaat 3739903  T
Q  473 ttttgcttacatttt 487  Q
    ||||||||| |||||    
T  3739904 ttttgcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 410 - 496
Target Start/End: Original strand, 5056322 - 5056407
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacagag 496  Q
    ||||||||||||||||| ||| ||||||||||||  |||||| ||||||||| || ||| |||||||| ||| |||||| |||||||    
T  5056322 aacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttatt-gaccaatttttgtttatattttgggacagag 5056407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 6061488 - 6061572
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacaga 495  Q
    |||||||||| ||||||||   ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| |||||||||||||||    
T  6061488 aacataagttaatgtatctagtacaaattttaaaacaaatacattaatttttgtt-gaccaatatttgctcacattttgagacaga 6061572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 487
Target Start/End: Original strand, 19758261 - 19758375
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggat-taacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    |||||| ||||| |||||||||||| |||||||  | |||| ||||||||||||| ||  ||||||| | ||| ||||||||||| ||||||| ||| ||    
T  19758261 tactccttccgtcccaaaatgtaagcaaaaatgagtataacgtaagttgatgtatttggtacaaattataaactaaatacattaacttttgtt-gaccaa 19758359  T
Q  472 tttttgcttacatttt 487  Q
    ||||| |||| |||||    
T  19758360 tttttacttatatttt 19758375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 454
Target Start/End: Original strand, 27527709 - 27527777
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacatt 454  Q
    ||||||| ||| ||||||||| | || |||||||||||||||||  | ||||||||||| |||||||||    
T  27527709 ccaaaatataaataaaaatgggtaaatataagttgatgtatctggtataaattttgaaccaaatacatt 27527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 26265776 - 26265854
Alignment:
Q  379 ctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaat 457  Q
    |||| |||||||||||||| ||||||   ||||||||||||||||||| |   | ||||||||||| |||||| |||||    
T  26265776 ctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 26265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 602656 - 602599
Alignment:
Q  388 aaaatgtaagtaaaaatggat-taacataagttgatgtatctgacacaaattttgaac 444  Q
    |||||||||||||||||||||  || |||||||||||||| ||| | |||||||||||    
T  602656 aaaatgtaagtaaaaatggataaaatataagttgatgtatttgatataaattttgaac 602599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 464
Target Start/End: Original strand, 10498356 - 10498408
Alignment:
Q  412 cataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||||||| ||| ||| ||||||||| ||| ||||| |||||||||||||    
T  10498356 cataagttgatatatttgatacaaattttaaactaaatatattaatttttgtt 10498408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 31784818 - 31784854
Alignment:
Q  466 gacaaatttttgcttacattttgagacagagagagta 502  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  31784818 gacaaatttttgcttacattttgggacagagggagta 31784854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 463
Target Start/End: Original strand, 3769740 - 3769834
Alignment:
Q  369 ggtatactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgt 463  Q
    |||||||||| |||||||||||||| |||||||||||  | |||| |||||||||||| | | ||||||||| ||| ||||||||||| ||||||    
T  3769740 ggtatactccatccgttccaaaatgcaagtaaaaatgagtcaacacaagttgatgtatttaatacaaattttaaactaaatacattaacttttgt 3769834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 37926338 - 37926450
Alignment:
Q  376 tccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaa-attttgaacaaaatacattaatttttgttcgacaaattt 474  Q
    ||||||||||| |||||||||| ||||||  |||||||||||||||||||||||   ||| |||||| || | | ||||||||||||||| ||| |||||    
T  37926338 tccctccgttcgaaaatgtaaggaaaaatttattaacataagttgatgtatctggttcaatattttgtaccagacacattaatttttgtt-gaccaattt 37926436  T
Q  475 ttgcttacattttg 488  Q
     |||||||||||||    
T  37926437 ctgcttacattttg 37926450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 491
Target Start/End: Complemental strand, 44816572 - 44816469
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattt 486  Q
    ||||||||||| ||||||| ||||| ||||  |||||||| ||  ||||||||||||| ||||||||||| ||||||| | | |||||||| ||||||||    
T  44816572 caaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgtt-ggccaatttttgtttacattt 44816474  T
Q  487 tgaga 491  Q
    |||||    
T  44816473 tgaga 44816469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 14773576 - 14773476
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaa-tttttgttcgacaaatttttgcttacatt 485  Q
    |||||| ||||||||||||  | ||| ||||||||||||||||| | ||||||||||| | ||||||||| ||||||||| || ||||||| ||||||||    
T  14773576 caaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttc-accaatttttacttacatt 14773478  T
Q  486 tt 487  Q
    ||    
T  14773477 tt 14773476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 15224028 - 15223928
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaa-tttttgttcgacaaatttttgcttacatt 485  Q
    |||||| ||||||||||||  | ||| ||||||||||||||||| | ||||||||||| | ||||||||| ||||||||| || ||||||| ||||||||    
T  15224028 caaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttc-accaatttttacttacatt 15223930  T
Q  486 tt 487  Q
    ||    
T  15223929 tt 15223928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 487
Target Start/End: Original strand, 18731994 - 18732093
Alignment:
Q  386 ccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatt 485  Q
    ||||||| |||| |||||||||| ||||||| ||||||||||||  | ||||||||||| ||||||||||| |||| || ||| ||||||| ||||||||    
T  18731994 ccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttatt-gaccaattttt-cttacatt 18732091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 481
Target Start/End: Original strand, 16866391 - 16866499
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    ||||||||||| | ||||||| |||| |||||| ||| || | ||||| ||||||  |  ||||||||| ||| ||||||||||| ||||||| ||| ||    
T  16866391 atactccctccatcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgtt-gaccaa 16866489  T
Q  472 tttttgctta 481  Q
    ||||||||||    
T  16866490 tttttgctta 16866499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 36035351 - 36035274
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| |||||||||||  |||||||||||||||||| | ||| | ||||||| ||  |||||| ||||||||||||    
T  36035351 caaaatataagtaaaaataaattaacataagttgatgtttttgatataaattttaaatcaaataccttaatttttgtt 36035274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 495
Target Start/End: Complemental strand, 5026220 - 5026138
Alignment:
Q  412 cataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacaga 495  Q
    ||||||||||||||| ||  |||||||||| || ||||| ||||| |||||||  || |||||||||||| |||||| ||||||    
T  5026220 cataagttgatgtatttggtacaaattttggactaaatatattaacttttgtt-aaccaatttttgcttatattttgggacaga 5026138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 6803367 - 6803298
Alignment:
Q  432 acaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacattttgagacagagagagta 502  Q
    ||||||||| ||| ||||||||||| ||||||| ||| || ||||||||| |||||| ||||||| |||||    
T  6803367 acaaattttaaactaaatacattaacttttgtt-gaccaaattttgcttatattttgggacagagtgagta 6803298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 464
Target Start/End: Complemental strand, 30794555 - 30794469
Alignment:
Q  378 cctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||  |||||||||||||||| ||||| ||||||| |  |||||| ||  ||||||||||||  ||||| ||||| |||||||    
T  30794555 cctccgtctcaaaatgtaagtaaaattggatcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgtt 30794469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 32652411 - 32652485
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    ||||||||||||||||||   | ||||||| ||| ||||| ||  ||||| ||||||| ||||||||||||||||    
T  32652411 caaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaattttt 32652485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 3719982 - 3719941
Alignment:
Q  387 caaaatgtaagtaaaaatggattaacataagttgatgtatct 428  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  3719982 caaaatgtaagcaaaaattgatcaacataagttgatgtatct 3719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 23971191 - 23971267
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||| |||| ||||||  || || |||||||||||||| ||  ||||||||||||| ||||| ||| |||||||||    
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaatatatttatttttgtt 23971267  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 34515855 - 34515906
Alignment:
Q  432 acaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacat 484  Q
    ||||||||||||||||||||||||| |||| || ||| || ||||||||||||    
T  34515855 acaaattttgaacaaaatacattaacttttatt-gaccaaattttgcttacat 34515906  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 13210046 - 13209992
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  13210046 aacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgtt 13209992  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 11114349 - 11114264
Alignment:
Q  379 ctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||| ||||||| ||||||||||| ||| ||||||||||||||||| ||  | ||||||| |||  ||||||||||||||||||    
T  11114349 ctccgtcccaaaatataagtaaaaattgatcaacataagttgatgtatttggtataaattttaaactgaatacattaatttttgtt 11114264  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 464
Target Start/End: Complemental strand, 8777867 - 8777797
Alignment:
Q  394 taagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    |||||||||||||||||||||||||| |||||| | | | ||||||||||| ||||| ||||| |||||||    
T  8777867 taagtaaaaatggattaacataagttaatgtatttaatataaattttgaaccaaatatattaacttttgtt 8777797  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 29797938 - 29798025
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaac---aaaatacattaatttttgtt 464  Q
    |||||||||||||||||| |||||||  ||||||||| || |||||| ||  |||||||||||||    |||||||||||||||||||    
T  29797938 tccgttccaaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgtt 29798025  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 33557781 - 33557854
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    |||||||||| |||||  ||| |||||||||| |||||| ||| ||||||||||||| ||||||||||| ||||    
T  33557781 aaaatgtaagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaactttt 33557854  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 37627908 - 37627971
Alignment:
Q  380 tccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaa 443  Q
    ||||||| |||||||||||||||||   |||| |||||||||||||| ||| ||||||||||||    
T  37627908 tccgttctaaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttgaa 37627971  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 11196249 - 11196299
Alignment:
Q  414 taagttgatgtatctgacacaaattttgaacaaaatacattaatttttgtt 464  Q
    ||||||||||||| | | ||||||||||||  |||||||||||||||||||    
T  11196249 taagttgatgtatttaatacaaattttgaattaaatacattaatttttgtt 11196299  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 493
Target Start/End: Original strand, 9548040 - 9548159
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    |||||| || ||| |||||||| ||| |||||||  | ||||||||||||||||| |   ||||||||||||| ||||| | ||||||||||| ||  ||    
T  9548040 atactctcttcgtcccaaaatgcaag-aaaaatgagtcaacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgtt-gaacaa 9548137  T
Q  472 tttttgcttacattttgagaca 493  Q
    |||||| ||| ||||| |||||    
T  9548138 tttttgtttatattttaagaca 9548159  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 481
Target Start/End: Complemental strand, 15114737 - 15114629
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaa-cataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaa 471  Q
    |||||||||| | | |||||||||| |||||| ||| || ||||| |||| |||| |   ||||||||||||  ||||||||||||||||||| ||| ||    
T  15114737 tactccctccatccaaaaatgtaagaaaaaattgatcaaacataaattgacgtatttagaacaaattttgaatcaaatacattaatttttgtt-gaccaa 15114639  T
Q  472 tttttgctta 481  Q
    ||||| ||||    
T  15114638 ttttttctta 15114629  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 32729715 - 32729780
Alignment:
Q  372 atactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaat 437  Q
    |||||||| |||| |||||||||||| ||||||| || |||| || ||||||||| ||| ||||||    
T  32729715 atactccccccgtcccaaaatgtaagcaaaaatgaatcaacaaaaattgatgtatttgaaacaaat 32729780  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 487
Target Start/End: Original strand, 35901036 - 35901139
Alignment:
Q  383 gttccaaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttac 482  Q
    |||||||||| |||| |||||||  | ||||||||||||||||  |   ||||||||||| |  |||||||||| ||||||| |||  |||||||||||     
T  35901036 gttccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgtt-gacctatttttgcttat 35901134  T
Q  483 atttt 487  Q
    |||||    
T  35901135 atttt 35901139  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 388 - 488
Target Start/End: Complemental strand, 13278 - 13179
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||||||||||||| |  |||| ||||||||||||||||   ||||||||| ||| ||||||||||| ||||||| ||   |||||||||||||||||    
T  13278 aaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgtt-gatccatttttgcttacatttt 13180  T

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Target: scaffold0027; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 13165 - 13218
Alignment:
Q  373 tactccctccgttccaaaatgtaagtaaaaatggattaacataagttgatgtat 426  Q
    |||||||||| |||||||||||||| |||||||||| |||| ||||| ||||||    
T  13165 tactccctccattccaaaatgtaagcaaaaatggatcaacaaaagttaatgtat 13218  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 487
Target Start/End: Complemental strand, 95050 - 94952
Alignment:
Q  388 aaaatgtaagtaaaaatggattaacataagttgatgtatctgacacaaattttgaacaaaatacattaatttttgttcgacaaatttttgcttacatttt 487  Q
    |||||||||  |||||| | | ||||||||||||||||| ||  |||||||||||||| ||||||||||||||| || ||  |||||| |||||||||||    
T  95050 aaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttatt-gatcaattttcgcttacatttt 94952  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 51249 - 51300
Alignment:
Q  410 aacataagttgatgtatctgacacaaattttgaacaaaatacattaattttt 461  Q
    ||||||||||||||||| ||  | ||||||||||| ||||||||||||||||    
T  51249 aacataagttgatgtatttggtataaattttgaactaaatacattaattttt 51300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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