View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_high_56 (Length: 265)
Name: NF14572_high_56
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_high_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 44 - 254
Target Start/End: Complemental strand, 18701355 - 18701145
Alignment:
| Q |
44 |
ccaagacaaggtttttggaaagctattatgagaagttggacctttttattttatttactgtctattgaaattcattttaactcaaccctcctcttcaaac |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701355 |
ccaagacaaggtttttggaaagctattatgagaagttggacctttttattttatttactgtctattgaaattcattttaactcaaccctcctcttcaaac |
18701256 |
T |
|
| Q |
144 |
atatctgcaaccaatttttacttatccaacgcaacatcaaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatgttctagg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18701255 |
atatctgcaaccaatttttacttatccaacgcaacatcaaaaagtctactaaattgatgacacaaaatgtatatctattaatgacgaaaaatgttccagg |
18701156 |
T |
|
| Q |
244 |
gcctttgcttc |
254 |
Q |
| |
|
||||||||||| |
|
|
| T |
18701155 |
gcctttgcttc |
18701145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 18701369 - 18701413
Alignment:
| Q |
26 |
tgttggtttctcagcatgccaagacaaggtttttggaaagctatt |
70 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
18701369 |
tgttggtttctcagtatgccaagacaaggtttctggaaagctatt |
18701413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 44309560 - 44309404
Alignment:
| Q |
87 |
ttttattttatttactgtctatt-----gaaattcattttaactcaaccctcctcttcaaacatatctgcaaccaatttttacttatccaacgcaacatc |
181 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
44309560 |
ttttattttatttaccgtctattttgttgaaattcattttaactcaaccctcctcttcaaacatatctgcaaccaatttttccttatccaatgcaacatc |
44309461 |
T |
|
| Q |
182 |
aaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatgtt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44309460 |
aaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatgtt |
44309404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 44310023 - 44309973
Alignment:
| Q |
45 |
caagacaaggtttttggaaagctattatgagaagttggacctttttatttt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44310023 |
caagacaaggtttttggaaagctattatgagaagttggacctttttatttt |
44309973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University