View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_high_61 (Length: 238)

Name: NF14572_high_61
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_high_61
NF14572_high_61
[»] chr3 (59 HSPs)
chr3 (18-236)||(36178202-36178420)
chr3 (18-236)||(51304690-51304908)
chr3 (62-236)||(49027139-49027313)
chr3 (62-236)||(12975005-12975179)
chr3 (62-236)||(26162259-26162433)
chr3 (63-236)||(33187832-33188005)
chr3 (62-236)||(48886552-48886725)
chr3 (63-236)||(43475592-43475765)
chr3 (63-231)||(42564112-42564280)
chr3 (63-231)||(6045068-6045236)
chr3 (63-231)||(10424392-10424560)
chr3 (83-223)||(20139743-20139883)
chr3 (63-236)||(30415182-30415364)
chr3 (136-236)||(31169986-31170086)
chr3 (132-236)||(35540289-35540393)
chr3 (74-232)||(21228297-21228456)
chr3 (147-236)||(11908297-11908386)
chr3 (124-236)||(27847819-27847931)
chr3 (74-223)||(51974416-51974565)
chr3 (157-236)||(51999789-51999868)
chr3 (74-223)||(21229353-21229503)
chr3 (63-192)||(4873915-4874044)
chr3 (155-236)||(35472037-35472118)
chr3 (148-236)||(50415529-50415617)
chr3 (74-216)||(49822700-49822843)
chr3 (74-192)||(33751487-33751605)
chr3 (61-131)||(35472112-35472182)
chr3 (148-236)||(49407044-49407132)
chr3 (74-217)||(47147448-47147592)
chr3 (74-216)||(17469591-17469734)
chr3 (74-216)||(50020173-50020316)
chr3 (153-236)||(6832879-6832962)
chr3 (74-216)||(25787511-25787654)
chr3 (74-216)||(25829468-25829611)
chr3 (74-216)||(33936362-33936505)
chr3 (169-232)||(46136996-46137059)
chr3 (112-216)||(49086350-49086455)
chr3 (112-199)||(5844792-5844879)
chr3 (74-216)||(42598166-42598309)
chr3 (74-216)||(50034465-50034607)
chr3 (154-223)||(38571895-38571964)
chr3 (76-216)||(42602047-42602188)
chr3 (154-231)||(55027020-55027097)
chr3 (74-216)||(51435801-51435944)
chr3 (115-216)||(30688657-30688759)
chr3 (160-223)||(15007458-15007521)
chr3 (170-231)||(4046393-4046454)
chr3 (58-113)||(48886707-48886762)
chr3 (157-216)||(25450236-25450296)
chr3 (157-223)||(15493523-15493590)
chr3 (62-113)||(35472163-35472214)
chr3 (63-113)||(6045219-6045269)
chr3 (63-113)||(10424543-10424593)
chr3 (162-230)||(47700680-47700749)
chr3 (62-102)||(12974972-12975012)
chr3 (61-113)||(26162415-26162467)
chr3 (201-233)||(29701970-29702002)
chr3 (17-45)||(33749015-33749043)
chr3 (61-113)||(49027295-49027347)
[»] chr4 (44 HSPs)
chr4 (18-236)||(13093885-13094103)
chr4 (18-236)||(35809522-35809740)
chr4 (18-236)||(27864036-27864254)
chr4 (66-236)||(33607187-33607357)
chr4 (64-236)||(53347410-53347585)
chr4 (63-229)||(16171623-16171789)
chr4 (65-223)||(28901124-28901282)
chr4 (63-231)||(23539408-23539576)
chr4 (63-231)||(3529995-3530163)
chr4 (63-231)||(8994921-8995089)
chr4 (65-233)||(34434267-34434434)
chr4 (63-231)||(34463275-34463443)
chr4 (63-223)||(13113699-13113859)
chr4 (88-223)||(28901307-28901442)
chr4 (86-236)||(18469076-18469225)
chr4 (62-199)||(28447411-28447548)
chr4 (74-219)||(33077608-33077753)
chr4 (63-223)||(56054425-56054580)
chr4 (136-236)||(19273164-19273264)
chr4 (108-231)||(34198995-34199118)
chr4 (136-235)||(48403625-48403724)
chr4 (61-163)||(33523603-33523705)
chr4 (63-236)||(3614970-3615152)
chr4 (144-236)||(17329627-17329719)
chr4 (157-236)||(4981931-4982010)
chr4 (74-216)||(36658617-36658760)
chr4 (74-217)||(2212097-2212241)
chr4 (74-216)||(46914292-46914435)
chr4 (112-199)||(19409695-19409782)
chr4 (74-216)||(21654605-21654748)
chr4 (74-216)||(53181234-53181377)
chr4 (173-236)||(45081200-45081263)
chr4 (144-232)||(39048788-39048877)
chr4 (112-216)||(47749830-47749935)
chr4 (170-231)||(52773164-52773225)
chr4 (58-108)||(33523567-33523617)
chr4 (196-236)||(23389693-23389733)
chr4 (61-113)||(28447377-28447429)
chr4 (196-236)||(33523705-33523745)
chr4 (201-236)||(38173856-38173891)
chr4 (63-113)||(8994888-8994938)
chr4 (63-113)||(13113666-13113716)
chr4 (63-113)||(34463426-34463476)
chr4 (201-233)||(52018020-52018052)
[»] chr7 (31 HSPs)
chr7 (18-236)||(45549111-45549328)
chr7 (62-236)||(26815299-26815473)
chr7 (62-236)||(32749127-32749301)
chr7 (62-236)||(40690499-40690673)
chr7 (62-236)||(32126974-32127148)
chr7 (63-231)||(40300671-40300839)
chr7 (63-231)||(42881770-42881938)
chr7 (63-231)||(22660049-22660217)
chr7 (112-236)||(114900-115024)
chr7 (63-236)||(36521664-36521846)
chr7 (148-236)||(38970310-38970398)
chr7 (144-235)||(39769984-39770075)
chr7 (125-223)||(33078551-33078649)
chr7 (121-236)||(43201660-43201776)
chr7 (74-223)||(1939669-1939819)
chr7 (147-236)||(38351874-38351963)
chr7 (148-236)||(37952038-37952126)
chr7 (157-236)||(20354528-20354607)
chr7 (146-223)||(33508346-33508423)
chr7 (74-216)||(5813453-5813596)
chr7 (74-192)||(25218070-25218188)
chr7 (144-231)||(47159148-47159235)
chr7 (74-216)||(22194403-22194546)
chr7 (148-231)||(28317819-28317902)
chr7 (74-216)||(30630389-30630532)
chr7 (154-223)||(30566879-30566948)
chr7 (112-199)||(33379498-33379585)
chr7 (155-216)||(24793686-24793748)
chr7 (63-113)||(42881737-42881787)
chr7 (61-113)||(26815265-26815317)
chr7 (61-113)||(32127130-32127182)
[»] chr6 (19 HSPs)
chr6 (18-236)||(26653877-26654095)
chr6 (18-236)||(26759846-26760064)
chr6 (61-236)||(18642420-18642595)
chr6 (62-236)||(34242586-34242757)
chr6 (63-231)||(8222279-8222447)
chr6 (63-230)||(12513190-12513360)
chr6 (74-230)||(12502087-12502243)
chr6 (74-231)||(24115226-24115384)
chr6 (86-234)||(7540402-7540551)
chr6 (63-236)||(34841644-34841826)
chr6 (143-230)||(10886486-10886573)
chr6 (74-216)||(6377233-6377376)
chr6 (74-216)||(17958101-17958244)
chr6 (112-199)||(34328613-34328700)
chr6 (184-236)||(24348766-24348818)
chr6 (74-216)||(634857-635000)
chr6 (154-223)||(30446521-30446590)
chr6 (74-216)||(29951829-29951972)
chr6 (61-113)||(34242552-34242604)
[»] chr5 (32 HSPs)
chr5 (18-236)||(13479317-13479535)
chr5 (61-236)||(32363180-32363355)
chr5 (108-236)||(25670529-25670657)
chr5 (63-231)||(29616228-29616396)
chr5 (111-236)||(27405907-27406032)
chr5 (95-236)||(42804507-42804648)
chr5 (94-231)||(30644776-30644913)
chr5 (136-236)||(39238794-39238894)
chr5 (147-236)||(4219139-4219228)
chr5 (63-236)||(32973109-32973291)
chr5 (147-236)||(23089794-23089883)
chr5 (63-236)||(27945789-27945971)
chr5 (147-236)||(39008768-39008857)
chr5 (63-236)||(40891959-40892141)
chr5 (74-216)||(7827290-7827432)
chr5 (74-216)||(21367763-21367906)
chr5 (74-197)||(25033363-25033486)
chr5 (74-216)||(31011832-31011975)
chr5 (85-199)||(41152646-41152760)
chr5 (168-236)||(3455111-3455179)
chr5 (74-216)||(4580184-4580327)
chr5 (154-223)||(36572146-36572215)
chr5 (110-231)||(36609830-36609952)
chr5 (58-113)||(32363336-32363391)
chr5 (144-232)||(15972845-15972934)
chr5 (144-219)||(177400-177476)
chr5 (170-231)||(13592652-13592713)
chr5 (63-113)||(29616408-29616458)
chr5 (64-102)||(30645786-30645824)
chr5 (201-233)||(7651290-7651322)
chr5 (17-45)||(25032678-25032706)
chr5 (157-216)||(41263689-41263749)
[»] chr8 (30 HSPs)
chr8 (61-236)||(13947636-13947811)
chr8 (62-235)||(13783913-13784086)
chr8 (61-236)||(1633139-1633314)
chr8 (61-223)||(43523984-43524146)
chr8 (63-231)||(15056749-15056917)
chr8 (61-229)||(38204958-38205126)
chr8 (62-236)||(30529369-30529531)
chr8 (136-236)||(26244877-26244977)
chr8 (136-236)||(40283855-40283955)
chr8 (62-236)||(1954972-1955155)
chr8 (143-236)||(29731938-29732031)
chr8 (147-236)||(44150158-44150247)
chr8 (144-236)||(44503519-44503611)
chr8 (74-192)||(27392651-27392769)
chr8 (147-236)||(23550002-23550090)
chr8 (74-216)||(8449788-8449931)
chr8 (74-216)||(35101572-35101715)
chr8 (76-216)||(36912745-36912886)
chr8 (74-192)||(17744753-17744871)
chr8 (74-216)||(13817226-13817369)
chr8 (154-231)||(12272197-12272274)
chr8 (74-190)||(26748740-26748856)
chr8 (155-229)||(31129178-31129249)
chr8 (74-216)||(5736204-5736347)
chr8 (157-216)||(18029100-18029160)
chr8 (74-216)||(5213972-5214115)
chr8 (112-199)||(34955105-34955192)
chr8 (61-108)||(38205112-38205159)
chr8 (63-113)||(1955137-1955187)
chr8 (65-113)||(13947607-13947655)
[»] chr2 (30 HSPs)
chr2 (62-236)||(7762903-7763077)
chr2 (62-232)||(6363565-6363735)
chr2 (62-236)||(5145098-5145272)
chr2 (62-236)||(4279268-4279442)
chr2 (84-236)||(17928928-17929080)
chr2 (63-231)||(22349638-22349806)
chr2 (86-235)||(36209184-36209333)
chr2 (147-236)||(1308402-1308491)
chr2 (63-236)||(7585255-7585437)
chr2 (147-236)||(17486102-17486191)
chr2 (86-175)||(39490326-39490415)
chr2 (74-216)||(2778902-2779045)
chr2 (74-216)||(8855174-8855317)
chr2 (74-216)||(31185040-31185183)
chr2 (74-216)||(31204766-31204909)
chr2 (76-216)||(37245831-37245972)
chr2 (74-199)||(36855175-36855300)
chr2 (74-195)||(39432535-39432656)
chr2 (74-216)||(12858066-12858209)
chr2 (74-216)||(30819420-30819563)
chr2 (74-192)||(9072748-9072866)
chr2 (74-199)||(926621-926746)
chr2 (154-231)||(1072799-1072876)
chr2 (128-229)||(16218467-16218569)
chr2 (168-222)||(39490428-39490482)
chr2 (188-235)||(6333012-6333059)
chr2 (202-236)||(13151304-13151338)
chr2 (170-223)||(44280391-44280444)
chr2 (117-197)||(14009592-14009671)
chr2 (171-231)||(43021965-43022025)
[»] chr1 (29 HSPs)
chr1 (62-236)||(29524076-29524250)
chr1 (62-236)||(51156405-51156579)
chr1 (62-236)||(45363654-45363828)
chr1 (63-236)||(47297312-47297485)
chr1 (62-232)||(51523442-51523612)
chr1 (62-236)||(33167388-33167565)
chr1 (63-230)||(17676081-17676247)
chr1 (63-231)||(31159599-31159767)
chr1 (63-231)||(48384915-48385083)
chr1 (86-236)||(8471413-8471562)
chr1 (63-231)||(48407536-48407704)
chr1 (74-199)||(18317589-18317714)
chr1 (143-236)||(45455626-45455719)
chr1 (109-236)||(36231138-36231264)
chr1 (63-236)||(2474845-2475027)
chr1 (74-217)||(31471363-31471507)
chr1 (74-216)||(45242227-45242370)
chr1 (74-216)||(52930446-52930589)
chr1 (184-236)||(37822901-37822953)
chr1 (112-199)||(37419996-37420083)
chr1 (169-236)||(30878353-30878420)
chr1 (149-231)||(48927133-48927216)
chr1 (74-192)||(17786420-17786538)
chr1 (132-223)||(36303329-36303421)
chr1 (132-223)||(48729669-48729761)
chr1 (112-199)||(27630112-27630199)
chr1 (55-113)||(51156561-51156619)
chr1 (63-113)||(48385066-48385116)
chr1 (191-231)||(10265770-10265810)
[»] scaffold1454 (1 HSPs)
scaffold1454 (61-236)||(444-619)
[»] scaffold0021 (1 HSPs)
scaffold0021 (62-229)||(109941-110108)
[»] scaffold0004 (2 HSPs)
scaffold0004 (62-236)||(106010-106184)
scaffold0004 (61-113)||(105976-106028)
[»] scaffold1905 (2 HSPs)
scaffold1905 (63-223)||(95-255)
scaffold1905 (147-235)||(1156-1244)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-223)||(166133-166282)
[»] scaffold0758 (1 HSPs)
scaffold0758 (74-216)||(6471-6614)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 59)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 36178420 - 36178202
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36178420 aaactaatcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatttggctgttgataat 36178321  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36178320 tgttgggattttggtagctaaatgaataatcagaagaattttaggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 36178221  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  36178220 aagaaatgctaataataag 36178202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 51304690 - 51304908
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  51304690 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggttgttgataat 51304789  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51304790 tgtagggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgggatccattttactaaacaaagactaaaacttcaa 51304889  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  51304890 aagaaatgctaataataag 51304908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 49027313 - 49027139
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  49027313 aaatttatttgggttttgaagatgttggttggaaaattgatttgggtgttgataattgttgggattttggtagctaaatggataatcagaaaaattttgg 49027214  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49027213 gtgttgaattgattattattaggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 49027139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 12975005 - 12975179
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12975005 aaattgatttaggttttgaatatgttggttggaaaattgatttaggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgg 12975104  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  12975105 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgcttttaataag 12975179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 26162433 - 26162259
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |    
T  26162433 aaattgatttgggttttgaagatgttggttggaaaattgatttgggtgttgataattgttgggattttgatagccaaatgggtaatcagaagaatttttg 26162334  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  26162333 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaaggctaattataag 26162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 33188005 - 33187832
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  33188005 aattgatttgggttttgaggatgttggttgaaaaattgatttgggtgttgataattgttgggattttggtagctagatgggtagtcagaagaattttggg 33187906  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  33187905 tgttgaattgatttttattgggatccatttcactaaataaagactaaaacttcaaaagaaaagctaataataag 33187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 48886725 - 48886552
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||||| |||||||||| || ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48886725 aaattgatttgggttttgaaggtgttggttgggaa-ttgatttaggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgg 48886627  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  48886626 gtgttgaattgattattattggaatccatttcactaaacaaagactaaaacttcaaaagaaatgcttttaataag 48886552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 43475592 - 43475765
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  43475592 aattgatttgggttttgaggatgttggttgtgaaattgatttgggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgag 43475691  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||| ||| || ||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  43475692 tgttgaattgattgttagtgggattcatttcactaaataaagactaaaacttcaaaagaaaagctaataataag 43475765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 42564112 - 42564280
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  42564112 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaatggtaatcagaagaattttggg 42564211  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  42564212 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 42564280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 6045236 - 6045068
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  6045236 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 6045137  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  6045136 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 6045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 10424560 - 10424392
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  10424560 aattgatttgggttttgaggatgttggttgagaaattgatttgggtgttgataattgttgggattttggtagctaaaatggtaatcagaagaattttggg 10424461  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||| ||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  10424460 tgtggaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 10424392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 20139743 - 20139883
Alignment:
Q  83 atgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattg 182  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  20139743 atgttggttgggaaattgatttgggtgttgataattgttgcgattttggtagctaaatgggtaatcagaagaattttgggtgttgaattaattattattg 20139842  T
Q  183 agatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
     ||||||||| |||||| |||||||||||||||| ||||||    
T  20139843 ggatccatttcactaaataaagactaaaacttcagaagaaa 20139883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 30415364 - 30415182
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  30415364 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 30415265  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  30415264 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 30415182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 31170086 - 31169986
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  31170086 taaatgggtaatcagaagaattttggctgttgaattgattattattgggattcatttcactaaacaaagactaaaacttcaagagaaatgctaataataa 31169987  T
Q  236 g 236  Q
    |    
T  31169986 g 31169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 35540393 - 35540289
Alignment:
Q  132 tagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| |||||||    
T  35540393 tagctaaatgagtaatcataagaattttggatgttgaattgattattattgagattcatttcactaaataaagattaaaacttcaaaagaaaagctaata 35540294  T
Q  232 ataag 236  Q
    |||||    
T  35540293 ataag 35540289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 21228297 - 21228456
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||   |    
T  21228297 gttttgaggacgttggttggaaaattgatttggattttgataattgttgggattttggtagctaaatgcgtaattagaagaattatgggtgttgaaaaaa 21228396  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgctaataa 232  Q
    ||||||||| ||||||||| |||||| | |||| ||||| || |||||||| | ||||||    
T  21228397 ttattattgggatccatttcactaaaaagaagattaaaattttaaaagaaaagttaataa 21228456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 11908297 - 11908386
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  11908297 tcagaagaattatgggtgttgaattgattattattgggatccatttcactaaagaaagactaaaacttcaaaagaaatgctaataataag 11908386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 27847819 - 27847931
Alignment:
Q  124 gattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    |||||||||||||||| | |||||| |||||||||||||||||| ||||||| ||| || ||||||||| |||||  |||||||||||||||||||||||    
T  27847819 gattttggtagctaaaagggtaatctgaagaattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaa 27847918  T
Q  224 tgctaataataag 236  Q
    |||||||||||||    
T  27847919 tgctaataataag 27847931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 51974416 - 51974565
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||||||| |||    
T  51974416 gttttgaggacgttggttggaaaattgatctggattttgataattgttgagattttggtagctaaatgggtaattaaaagaattctgggtgttgaaatga 51974515  T
Q  174 ttattattgagatccattttact-aaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||| ||||||||| ||| |||  || | |||||||||||||||||    
T  51974516 ttattattg-gatccatttcactgaaaagaatattaaaacttcaaaagaaa 51974565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 51999868 - 51999789
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51999868 tttgggtattgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 51999789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 21229503 - 21229353
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||||||||||||| | | | || |||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||  ||    
T  21229503 gttttgaggaagttggttggaaaattgatttcgatttttataattgttgcgattttgatagctaaatgggtaattagaagaattttgggtgttgaaagga 21229404  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    ||||||||| ||| ||||| |||||| | |||| ||||||||| |||||||    
T  21229403 ttattattgggattcatttcactaaaaagaagattaaaacttcgaaagaaa 21229353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 4874044 - 4873915
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||| | |||||||||||  |||||||| ||||||||||||||  || ||||||||||||||| ||| |||||| |||||| ||||||    
T  4874044 aattgatttgggttttaaggatgttggttgagaaattgatttgggtgttgataataatttggattttggtagctagatgggtaatctgaagaactttggg 4873945  T
Q  163 tgttgaattgattattattgagatccattt 192  Q
    | ||||||||||| |||||| |||| ||||    
T  4873944 tattgaattgattgttattgggatcaattt 4873915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 35472118 - 35472037
Alignment:
Q  155 attttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35472118 attttgggtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaattataag 35472037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 50415617 - 50415529
Alignment:
Q  148 cagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  50415617 cagaagaattttgggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaatttcaaaagaaatgctaataataag 50415529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 49822843 - 49822700
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| |||    
T  49822843 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatga 49822744  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||||||||| || ||| | |||| ||||||||||    
T  49822743 ttattattgagatccatttcacaaaaaataagattaaaacttca 49822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 33751487 - 33751605
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| ||||||||||| ||||||||||||| | | |||||||||||||||||| |||| |||||| ||||| |||| | |||||||||||||| ||     
T  33751487 gttttgaggatgttggttgaaaaattgatatggatttggataattgttgggattttcgtagttaaatgggtaattagaaaatttttgggtgttgaaatgg 33751586  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||| |||||||||    
T  33751587 ttattattgggatccattt 33751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 35472182 - 35472112
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttgg 131  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  35472182 aaaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttgg 35472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 49407132 - 49407044
Alignment:
Q  148 cagaagaattttgggtgtt-gaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  49407132 cagaagaattttgggtgttagaattgattattatt-agatccatttcactaaataaagactaaaacttcaaaagaaaagctaataataag 49407044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 47147448 - 47147592
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  47147448 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 47147547  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaa 217  Q
    ||||||||| ||||||||| |||||| | |||| |||||||||||    
T  47147548 ttattattgggatccatttcactaaaaataagattaaaacttcaa 47147592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 17469591 - 17469734
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  17469591 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 17469690  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  17469691 ttattattgggatccatttcactaaaaataagattaaaacttca 17469734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 50020173 - 50020316
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtg-ttgaattg 172  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||| ||||| |||| |||||| ||||| |||| ||||||||||| ||||| ||    
T  50020173 gttttgaggacgttggttgaaaaattgatttggatttggataattgttggaattttcgtagttaaatgggtaattagaataattttgggtgtttgaaatg 50020272  T
Q  173 attattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    |||||||||| ||| |||||||||||| | |||| ||||||||||    
T  50020273 attattattgggat-cattttactaaaaataagattaaaacttca 50020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 6832879 - 6832962
Alignment:
Q  153 gaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| |  ||||||||| ||||||||||||| ||||||||||||    
T  6832879 gaattttgggtgttgaattgattattattggaatccatttcactcagtaaagactaatacttcaaaagaaaagctaataataag 6832962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 25787654 - 25787511
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  25787654 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 25787555  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  25787554 ttattattgggatccatttcacaaaaaataagattaaaacttca 25787511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 25829611 - 25829468
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  25829611 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 25829512  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  25829511 ttattattgggatccatttcacaaaaaataagattaaaacttca 25829468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 33936362 - 33936505
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||| ||     
T  33936362 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgaaatgg 33936461  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  33936462 ttattattgggatccatttcacaaaaaataagattaaaacttca 33936505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 46137059 - 46136996
Alignment:
Q  169 attgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataa 232  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  46137059 attgattattattgggatccatttcactaaataaagactaaaacttcaaaagaaatgctaataa 46136996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 49086350 - 49086455
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaa 210  Q
    |||||||||||||||||| |||| ||||||  |||| |||| |||||||||||||||| || ||||||||| ||||||||| |||||| | |||| ||||    
T  49086350 gataattgttgggattttcgtagttaaatggataattagaataattttgggtgttgaaatggttattattgggatccatttcactaaaaataagattaaa 49086449  T
Q  211 acttca 216  Q
    ||||||    
T  49086450 acttca 49086455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 5844879 - 5844792
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| || ||||||||| ||||||||| ||||||    
T  5844879 gataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatggttattattgggatccatttcactaaa 5844792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 42598309 - 42598166
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | ||||| |||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  42598309 gttttgaggacgttggttataaaattgatttggatttggataaatgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 42598210  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  42598209 ttattattgggatccatttcacaaaaaataagattaaaacttca 42598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 50034465 - 50034607
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||  | | |||| ||||||||||||| |||| |||||| ||| | |||| |||||||||||||||| ||     
T  50034465 gttttgaggacgttggttgaaaaattgatttgaatttggata-ttgttgggattttcgtagttaaatgggtagttagaataattttgggtgttgaaatgg 50034563  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  50034564 ttattattgggatccatttaactaaaaataagattaaaacttca 50034607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 38571964 - 38571895
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||| |||||||||||||||| ||| || ||||||||| |||||| |||||||||||||||||||||||    
T  38571964 aatttggggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaacttcaaaagaaa 38571895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 42602047 - 42602188
Alignment:
Q  76 tttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgatt 175  Q
    ||||| ||||||| ||| ||||||||| ||| | | |||||||||| |||||||  ||| |||||| ||||| |||| ||||||||||||| || || ||    
T  42602047 tttgaggatgttgattgaaaaattgatttggatttggataattgttaggattttcatagttaaatgggtaattagaataattttgggtgttaaaatggtt 42602146  T
Q  176 attattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||| |||| |||| |||||| | |||| ||||||||||    
T  42602147 attattgggatctatttcactaaaaataagattaaaacttca 42602188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 55027020 - 55027097
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||| |||||||||||||||| ||| || ||||||||| |||||| |||||||||||||| |||||||| |||||||    
T  55027020 aatttggggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaactttaaaagaaaagctaata 55027097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 51435801 - 51435944
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||  ||     
T  51435801 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgagatgg 51435900  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  51435901 ttattattgggatccatttcacaaaaaataagattaaaacttca 51435944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 30688759 - 30688657
Alignment:
Q  115 aattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaact 213  Q
    ||||||||| ||||| |||| |||||| ||||| |||| |||||||||||||||| || ||||||||| ||||||||| | |||| | |||| |||||||    
T  30688759 aattgttggaattttcgtagttaaatgggtaattagaataattttgggtgttgaaatggttattattgggatccatttcattaaaaataagattaaaact 30688660  T
Q  214 tca 216  Q
    |||    
T  30688659 tca 30688657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 15007458 - 15007521
Alignment:
Q  160 gggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||||||||||  || || ||||||||| |||||| |||||||||||||||||||||||    
T  15007458 gggtgttgaattgattgctagtgggatccatttcactaaataaagactaaaacttcaaaagaaa 15007521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 4046393 - 4046454
Alignment:
Q  170 ttgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||  || ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  4046393 ttgattatttctgggatccatttcactaaataaacactaaaacttcaaaagaaatgctaata 4046454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 48886762 - 48886707
Alignment:
Q  58 cttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||| |||||| |||||||||||| |||||||| ||||| ||||    
T  48886762 cttaaaattgatttggattttgaggatgttggttgggaaattgatttgggttttga 48886707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 25450296 - 25450236
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||| |||||||||||| ||||||||| |||||| | |||| ||||||||||    
T  25450296 tttgggtgttgaaatgattattattgggatccatttcactaaaaataagattaaaacttca 25450236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 15493590 - 15493523
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    ||||||||||||| ||||||||||||  ||| |||| |||||| | |||| |||||||||||||||||    
T  15493590 tttgggtgttgaaatgattattattggaatctatttcactaaaaagaagattaaaacttcaaaagaaa 15493523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 35472214 - 35472163
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||| |||||| ||| ||||||||||||||||| ||||| ||||    
T  35472214 aaattgatttggattttgaggattttggttggaaaattgatttgggttttga 35472163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 6045269 - 6045219
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  6045269 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 6045219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 10424593 - 10424543
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  10424593 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 10424543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 47700749 - 47700680
Alignment:
Q  162 gtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgctaat 230  Q
    |||||||| ||||||||||||  |||||||| |||||| | |||  ||||||||||||||||| ||||||    
T  47700749 gtgttgaaatgattattattggaatccatttcactaaaaagaagtttaaaacttcaaaagaaaagctaat 47700680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 12974972 - 12975012
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgat 102  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  12974972 aaattgatttggattttgaggatgttggttgggaaattgat 12975012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 26162467 - 26162415
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| ||| |||||||| |||||||| ||||| ||||    
T  26162467 aaaattgatttggattttgaggattttggttgggaaattgatttgggttttga 26162415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 29701970 - 29702002
Alignment:
Q  201 aaagactaaaacttcaaaagaaatgctaataat 233  Q
    ||||||||||||||||||||||| |||||||||    
T  29701970 aaagactaaaacttcaaaagaaaagctaataat 29702002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 33749015 - 33749043
Alignment:
Q  17 aaaactaagcatacaacacacaagtaatt 45  Q
    |||||||||||||||||||||||||||||    
T  33749015 aaaactaagcatacaacacacaagtaatt 33749043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 49027347 - 49027295
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||    
T  49027347 aaaattgatttggattttgaggatgttggttgggaaatttatttgggttttga 49027295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 13094103 - 13093885
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  13094103 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggctgttgataat 13094004  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  13094003 tgtagggattttggtagctaaatgagtaatcaaaagaattttgggtgttgaattgattattattgggatccattttattaaacaaagactaaaacttcaa 13093904  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  13093903 aagaaatgctaataataag 13093885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 35809522 - 35809740
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  35809522 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggctgttgataat 35809621  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  35809622 tgtagggattttggtagctaaatgagtaatcagaaaaattttgggtgttgaattgattattattgggatccattttattaaacaaagactaaaacttcaa 35809721  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  35809722 aagaaatgctaataataag 35809740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 27864036 - 27864254
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| ||||||||||    
T  27864036 aaactaagcgtacaacacacaagtaattatttaagtataacttaaaattgatttcagttttgaagatgttggttgggaaattgatttggctgttgataat 27864135  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27864136 tgtagggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgggatccattttactaaacaaagactaaaacttcaa 27864235  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  27864236 aagaaatgctaataataag 27864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 33607187 - 33607357
Alignment:
Q  66 tgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgt 165  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33607187 tgatttgggttttgaagatgttggttgggaaattgatttaggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgggtgt 33607286  T
Q  166 tgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  33607287 tgaattgattattattgagatccatttcactaaacaaagactaaaacttcaaaagaaatgcttttaataag 33607357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 53347585 - 53347410
Alignment:
Q  64 attgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggt 163  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  53347585 attgatttgggttttgaagatgttggttgggaaattgattttggtgttgataattgttgggattttggtagttaaatggataatcagaagaattttgggt 53347486  T
Q  164 gttgaattgattat---tattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||   ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  53347485 gttgaattgattattattattgggatccatttcactaaataaagactaaaacttcaaaagaaatgctaataataag 53347410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 16171789 - 16171623
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  16171789 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgttggtattttggtagctaaaagggtaatcagaagaattttggg 16171690  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaa 229  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| |||||||||||||||||||||||||    
T  16171689 tgttgaattgattgttagtgggatccatttcactaaataaatactaaaacttcaaaagaaatgctaa 16171623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 28901124 - 28901282
Alignment:
Q  65 ttgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtg 164  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  28901124 ttgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaatgggtaatcataagaattttgggtg 28901223  T
Q  165 ttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||    
T  28901224 ttgaattgattgttattgggatccatttcactaaataaagactaaaacttcaaaagaaa 28901282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 23539576 - 23539408
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  23539576 aattgatttgggttttgaggatgttggttgtgaaattgatttgggtgttgataattgttgggattttggtagttaaatgggtaataagaagaattttggg 23539477  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||||||||||||||||||||||| |||||||    
T  23539476 tgttgaattgattgttactgggatccatttcactaaataaagactaaaacttcaaaagaaaagctaata 23539408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 3530163 - 3529995
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  3530163 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 3530064  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  3530063 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 3529995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 8994921 - 8995089
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  8994921 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 8995020  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  8995021 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 8995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 34434434 - 34434267
Alignment:
Q  65 ttgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtg 164  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||  |||| ||||||||||||  |||||||||||||||||||||    
T  34434434 ttgatttggattttgaagatgttggttggaaaattgatttgtgtgttgataattgttgaaattt-ggtagctaaatggataatcagaagaattttgggtg 34434336  T
Q  165 ttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataat 233  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||  ||||||||    
T  34434335 ttgaattgattattattgggatccatttcactaaataaagactaaaacttcaaaagaaaaactaataat 34434267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 34463443 - 34463275
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||    
T  34463443 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaatggtaatcagaataattttggg 34463344  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  34463343 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 34463275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 13113699 - 13113859
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  13113699 aattgatttgggttttgaggatgttggttgggaaattgatttgagtgttgataattgttgggattttggtagctaaaatggtaatcataagaattttggg 13113798  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| |||||||||||||||||||    
T  13113799 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaa 13113859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 28901307 - 28901442
Alignment:
Q  88 ggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatc 187  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||    
T  28901307 ggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgggtgttgaattgattgttattggaatc 28901406  T
Q  188 cattttactaaacaaagactaaaacttcaaaagaaa 223  Q
     |||| |||||| |||||||||||||||||||||||    
T  28901407 aatttcactaaataaagactaaaacttcaaaagaaa 28901442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 18469225 - 18469076
Alignment:
Q  86 ttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgaga 185  Q
    |||||||| |||||||| || ||||||||| |||||||||||||| |||||||||  ||| ||||||||||||| ||||||||||||||||||||| |||    
T  18469225 ttggttgggaaattgatttgagtgttgata-ttgttgggattttgatagctaaattggtattcagaagaatttttggtgttgaattgattattattcaga 18469127  T
Q  186 tccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  18469126 tccatttcactaaacaaagactaaaactttaaaagaaatgctaataataag 18469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 28447411 - 28447548
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||| ||||||| |||| |||||||| |||| |||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  28447411 aaattgatttgggttttgaggatgttgattgggaaattgatttgggcgttgataattgttggggttttggtagctaaattggtaatcagaagaattttgg 28447510  T
Q  162 gtgttgaattgattattattgagatccattttactaaa 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  28447511 gtgttgaattgattattattgggatccatttcactaaa 28447548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 33077753 - 33077608
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| || ||| |||||||||||||    
T  33077753 gttttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaagtgtaatcagaaaaaattttggtgttgaattga 33077654  T
Q  174 ttattattgagatccattttactaaacaaagactaaaacttcaaaa 219  Q
    || ||| || ||||||||| |||||| |||||| ||||||||||||    
T  33077653 ttgttagtgtgatccatttcactaaataaagaccaaaacttcaaaa 33077608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 56054425 - 56054580
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||     ||||||||||    
T  56054425 aattgatttggattttgaggatgttggttgggaaattgatttgggtgttcataattgttggaattttggtagctaaatgggtaat-----gaattttggg 56054519  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| |||||||||||||||||||    
T  56054520 tgttgaattgattgttagtgggatccatttcactaaataaaaactaaaacttcaaaagaaa 56054580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 19273164 - 19273264
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  19273164 taaatgagtaatcagaagaattttgggtgttgaattgattattattgggattcattttactaaacaaaaactaaaacttcaaaagaaatgcaaataataa 19273263  T
Q  236 g 236  Q
    |    
T  19273264 g 19273264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 34199118 - 34198995
Alignment:
Q  108 tgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagact 207  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||  |||    
T  34199118 tgttgataattgttgggattttggtagctaaaatggtaatcagaagaattttgggtgttgaattgattgttagtgggatccatttcactaaataagcact 34199019  T
Q  208 aaaacttcaaaagaaatgctaata 231  Q
    |||||||||||||||| |||||||    
T  34199018 aaaacttcaaaagaaaggctaata 34198995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 48403724 - 48403625
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48403724 taaatgggtaatcagaagaattttggatgttgaattgattattattgggatccattttactaaacagagactaaaacttcaaaagaaatactaataataa 48403625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 33523603 - 33523705
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    |||||||||||||||||| ||| |||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33523603 aaaattgatttgggttttaaaggtgttggttgggaaattgatttaggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttg 33523702  T
Q  161 ggt 163  Q
    |||    
T  33523703 ggt 33523705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 3615152 - 3614970
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  3615152 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 3615053  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  3615052 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 3614970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 17329719 - 17329627
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17329719 taatcagaagaattttgggtgttgaattgattattatttggattcatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 17329627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 4981931 - 4982010
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  4981931 tttgggtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaattataag 4982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 36658617 - 36658760
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||| ||||||| |||| |||||||||||| |||| |||||||||||||||| ||     
T  36658617 gttttgaggacgttggttgaaaaattgatttggatttggataattgtttggattttcgtagttaaatgagtaattagaataattttgggtgttgaaatgg 36658716  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  36658717 ttattattgcgatccatttcactaaaaataagattaaaacttca 36658760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 2212241 - 2212097
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  2212241 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 2212142  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaa 217  Q
    ||||||||| ||||||||| |||||| | |||| |||||||||||    
T  2212141 ttattattgggatccatttcactaaaaataagattaaaacttcaa 2212097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 46914435 - 46914292
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  46914435 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 46914336  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  46914335 ttattattgggatccatttcactaaaaataagattaaaacttca 46914292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 19409695 - 19409782
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||| || ||||||||| ||||||||| ||||||    
T  19409695 gataattgttgggattttcgtagttaaatgagtaattagaataattttgggtgttgaaatggttattattgggatccatttcactaaa 19409782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 21654748 - 21654605
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||| ||     
T  21654748 gttttgaggacgttggttgaaaaattgatttggatttagataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgaaatgg 21654649  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  21654648 ttattattgggatccatttcacaaaaaataagattaaaacttca 21654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 53181377 - 53181234
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  53181377 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 53181278  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  53181277 ttattattgggatccatttcacaaaaaataagattaaaacttca 53181234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 45081263 - 45081200
Alignment:
Q  173 attattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  45081263 attattattgggatccatttcactaaacaaagactaaaacttcaaaagaattgctaattataag 45081200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 39048877 - 39048788
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgctaataa 232  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||| | |||  |||||||||||||||||  |||||||    
T  39048877 taattagaagaattctgggtgttgaaatgattattattgagatccatttcactaaaaagaagtttaaaacttcaaaagaaaatctaataa 39048788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 47749935 - 47749830
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaa 210  Q
    |||||||||||||||||| |||| |||||| ||||| |||| | |||||||||||||| |  ||||||||| |||||||||||| ||| | |||| ||||    
T  47749935 gataattgttgggattttcgtagttaaatgggtaattagaaaatttttgggtgttgaaatagttattattgggatccattttacaaaaaataagattaaa 47749836  T
Q  211 acttca 216  Q
    ||||||    
T  47749835 acttca 47749830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 52773164 - 52773225
Alignment:
Q  170 ttgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||  || ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  52773164 ttgattatttctgggatccatttcactaaataaacactaaaacttcaaaagaaatgctaata 52773225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 33523567 - 33523617
Alignment:
Q  58 cttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggt 108  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  33523567 cttaaaatagatttggattttgaggatgttggttggaaaattgatttgggt 33523617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 23389733 - 23389693
Alignment:
Q  196 taaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  23389733 taaacaaagactaaaacttcaaaagaaactctaataataag 23389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 28447377 - 28447429
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| | |||||||||||| |||||||| ||||| ||||    
T  28447377 aaaattgatttgggttttaaggatgttggttgggaaattgatttgggttttga 28447429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 33523705 - 33523745
Alignment:
Q  196 taaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  33523705 taaacaaagactaaaacttcaaaagaaatgcttttaataag 33523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 38173856 - 38173891
Alignment:
Q  201 aaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38173856 aaagactaaaacttcaaaagaaaagctaataataag 38173891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 8994888 - 8994938
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  8994888 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 8994938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 13113666 - 13113716
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  13113666 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 13113716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 34463476 - 34463426
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  34463476 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 34463426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 52018020 - 52018052
Alignment:
Q  201 aaagactaaaacttcaaaagaaatgctaataat 233  Q
    ||||||||||||||||||||||| |||||||||    
T  52018020 aaagactaaaacttcaaaagaaaagctaataat 52018052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 45549328 - 45549111
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  45549328 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggctgttgataat 45549229  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45549228 tgtagggattttggtagctaaatgattaatcagaagaattttgggt-ttgaattgattattattgggatccattttactaaacaaagactaaaacttcaa 45549130  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||| ||||||||||    
T  45549129 aagaaatgataataataag 45549111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 26815299 - 26815473
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26815299 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttgatagccaaatgagtaatcagaagaattttgg 26815398  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  26815399 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaaggctaattataag 26815473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 32749127 - 32749301
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  32749127 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttggaattttgatagctaaatgggtaatcagaagaattttgg 32749226  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  32749227 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaattataag 32749301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 40690499 - 40690673
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  40690499 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttggaattttgatagctaaatgggtaatcagaagaattttgg 40690598  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  40690599 gtgttaaattgattattattgggatccatttcactaaataaagactaaaacttcaaaagaaatgctaattataag 40690673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 32127148 - 32126974
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  32127148 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttgatagccaaatgggtaatcagaagaattttgg 32127049  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||  |||||| |||||    
T  32127048 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaatggctaattataag 32126974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 40300839 - 40300671
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40300839 aattgatttggattttgaggatgttggttggtaaattgatttgggtgttgataattgttgggattttggtagctaaaagagtaatcagaagaattttggg 40300740  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  40300739 tgttgaattgattgttagtgtgatccatttcactaaataaatactaaaacttcaaaagaaaagctaata 40300671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 42881770 - 42881938
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  42881770 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 42881869  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  42881870 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 42881938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 22660049 - 22660217
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||     
T  22660049 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgttgaaattttggtagctaaaagggtaatcagaagaattttgga 22660148  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  22660149 tgttgaattgattgttagtgggatccatttcactaaataaatactaaaacttcaaaagaaaagctaata 22660217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 114900 - 115024
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaa 211  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  114900 gataattgttgggattttggtagctaaatggctaatcagaagaattttagatgttgaattgattattattgggatccatttcactaaataaagactaaaa 114999  T
Q  212 cttcaaaagaaatgctaataataag 236  Q
    |||||||||||| ||||||||||||    
T  115000 cttcaaaagaaaagctaataataag 115024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 36521664 - 36521846
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  36521664 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 36521763  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  36521764 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 36521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 38970310 - 38970398
Alignment:
Q  148 cagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  38970310 cagaagaattttgggtgttgaattgattattattgagatccatttcactaaataaagactaaaacttcaaaagaaaagctaataataag 38970398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 39769984 - 39770075
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39769984 taatcagaagaattttgggtgttgaattgattattatttgaatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataa 39770075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 33078649 - 33078551
Alignment:
Q  125 attttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||| |||||| |||||||||||||||||||||||    
T  33078649 attttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattgtcagtgggatccatttcactaaataaagactaaaacttcaaaagaaa 33078551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 43201776 - 43201660
Alignment:
Q  121 tgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaa-gactaaaacttcaaaa 219  Q
    |||||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  43201776 tgggattttggtagctaaatgaataatcagaagaattctgagtgttcaaatgattattattgggatccatttcactaaaaaaatgactaaaacttcaaaa 43201677  T
Q  220 gaaatgctaataataag 236  Q
    |||| ||||||||||||    
T  43201676 gaaaagctaataataag 43201660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 1939819 - 1939669
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||||||||||||| | | | |||||||||||||||||||||||| |||||||  |||| ||||||||| || |||||||| |||    
T  1939819 gttttgaggacgttggttggaaaattgatttcgattttgataattgttgggattttggtaactaaatggataattagaagaattctgagtgttgaaatga 1939720  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    ||||||||| ||||||||| |||||| | |||| ||| |||||||||||||    
T  1939719 ttattattgggatccatttcactaaaaagaagattaacacttcaaaagaaa 1939669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 38351874 - 38351963
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  38351874 tcagaagaattttgtgtgttgaattgattattattgggatccatttcattaaacaaagactaaaactttaaaagaaatgctaataataag 38351963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 37952038 - 37952126
Alignment:
Q  148 cagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  37952038 cagaagaattttgggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaacttcaaaagaaatgctaataataag 37952126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 20354528 - 20354607
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20354528 tttgagtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 20354607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 33508423 - 33508346
Alignment:
Q  146 atcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||    
T  33508423 atcagaagaattttgggtgttgaattgattgttattgggatccatttcactaaataaagactaaaacttcaaaagaaa 33508346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 5813453 - 5813596
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  5813453 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 5813552  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  5813553 ttattattgggatccatttcactaaaaataagattaaaacttca 5813596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 25218188 - 25218070
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | |  ||||||||||||||||| |||| |||||| ||||| |||| |||||||||||||||| |||    
T  25218188 gttttgaggacgttggttgaaaaattgatttggatttgaataattgttgggattttcgtagttaaatgggtaattagaaaaattttgggtgttgaaatga 25218089  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||| |||||||||    
T  25218088 ttattattgggatccattt 25218070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 47159235 - 47159148
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||| ||| || ||| ||||||||||||||||||| |||||||    
T  47159235 taatcagaagaattttgggtgttgaattgattgttagtgggatccatttcactgaataaacactaaaacttcaaaagaaaggctaata 47159148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 22194403 - 22194546
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  22194403 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 22194502  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  22194503 ttattattgggatccatttcacaaaaaataagattaaaacttca 22194546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 28317902 - 28317819
Alignment:
Q  148 cagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||||||||||||||||||||| ||| || || |||||| |||||| ||| ||||||||||||||||||| |||||||    
T  28317902 cagaagaattttgggtgttgaattgattgttagtgggacccatttcactaaataaacactaaaacttcaaaagaaaggctaata 28317819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 30630532 - 30630389
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| |||   | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||| ||     
T  30630532 gttttgaggacgttggttgaaaaattgatttggacttggataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgaaatgg 30630433  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  30630432 ttattattgggatccatttcacaaaaaataagattaaaacttca 30630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 30566879 - 30566948
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||| |||||||||||||||| ||| || ||||||||| | |||| |||||||||||||||||||||||    
T  30566879 aatttggggtgttgaattgattgttagtgtgatccatttcattaaataaagactaaaacttcaaaagaaa 30566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 33379498 - 33379585
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    ||||||||||| |||||| |||| || ||| ||||| |||| |||||||||||||||| |  ||||||||| ||||||||| ||||||    
T  33379498 gataattgttgagattttcgtagttagatgggtaattagaaaaattttgggtgttgaaattgttattattgggatccatttcactaaa 33379585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 24793686 - 24793748
Alignment:
Q  155 attttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||||| || ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  24793686 attttgggtgttgaaatggttattattgggatccatttcactaaaaataagattaaaacttca 24793748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 42881737 - 42881787
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  42881737 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 42881787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 26815265 - 26815317
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| ||| |||||||| |||||||| ||||| ||||    
T  26815265 aaaattgatttggattttgaggattttggttgggaaattgatttgggttttga 26815317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 32127182 - 32127130
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| ||| |||||||| |||||||| ||||| ||||    
T  32127182 aaaattgatttggattttgaggattttggttgggaaattgatttgggttttga 32127130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 26654095 - 26653877
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||    
T  26654095 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggctgttgatgat 26653996  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
     || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26653995 cgtagagattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattggaatccattttactaaacaaagactaaaacttcaa 26653896  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  26653895 aagaaatgctaataataag 26653877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 26760064 - 26759846
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||    
T  26760064 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttgggaaattgatttggctgttgatgat 26759965  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
     || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26759964 cgtagagattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattggaatccattttactaaacaaagactaaaacttcaa 26759865  T
Q  218 aagaaatgctaataataag 236  Q
    |||||||||||||||||||    
T  26759864 aagaaatgctaataataag 26759846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 18642420 - 18642595
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||    
T  18642420 aaaattgatttgggtttagaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaagtataatgagaagaattttg 18642519  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18642520 ggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 18642595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 34242586 - 34242757
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34242586 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaatggataatcagaagaattttgg 34242685  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||| |||||||   ||||||| ||||||||| |||||  ||||||||||||||||||||||| ||||||||||||    
T  34242686 gtgctgaattg---attattgggatccatttcactaagtaaagactaaaacttcaaaagaaaagctaataataag 34242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 8222279 - 8222447
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8222279 aattgatttggattttgaggatgttggctgggaaattgatttgggtgttgataattgttgggattttggtagctaaatggataatcagaagaattttggg 8222378  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
     |||||||||||| |||||| ||||||||| |||||| ||   |||||||||||||||||| |||||||    
T  8222379 cgttgaattgattgttattgggatccatttcactaaataatttctaaaacttcaaaagaaaagctaata 8222447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 12513190 - 12513360
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaa---atgagtaatcagaagaatttt 159  Q
    |||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||   ||| |||||||||||||||||    
T  12513190 aattgatttgggttttgaggatgttggttggcaaattgatttggatgttgataattgttgggattttgatagctaataaatgggtaatcagaagaatttt 12513289  T
Q  160 gggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaat 230  Q
     | ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||| ||| ||||||    
T  12513290 agatgttgaattgattgttattgggatccatttcactaaataaagactaaaacttcaaaataaaagctaat 12513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 12502087 - 12502243
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||    
T  12502087 gttttgaggatgttaattgggaaattgatttgggtgttgataattgttgggattttggtagctaaatggataagcagaataattttgggtgttgaattga 12502186  T
Q  174 ttattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaat 230  Q
    || |||||  ||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  12502187 ttgttatttggatccatttcactaaataaagactaaaacttcaaaagaaaagctaat 12502243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 24115226 - 24115384
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| |||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||  ||| ||||||||||| ||||||||||| |||    
T  24115226 gttttgaggatgttggttgggaaattgatttggatgttgataattgtttggattttggtagctaaataggtattcagaagaattctgggtgttgaaatga 24115325  T
Q  174 ttattattgagatccattttact-aaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||| ||||||||| ||| ||| ||||||||||| ||||||||||| |||||||    
T  24115326 ttattattgggatccatttcactaaaaaaaagactaaaagttcaaaagaaaagctaata 24115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 7540402 - 7540551
Alignment:
Q  86 ttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgaga 185  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||  |||| ||||||||| |||||||||||  ||||||||||| ||    
T  7540402 ttggttggaaaattgatttggattttgataattgttgggattttggtagctaaatggataattagaagaattatgggtgttgaaaggattattattggga 7540501  T
Q  186 tccattttactaaaca-aagactaaaacttcaaaagaaatgctaataata 234  Q
    ||||||| |||||| | |||| ||||||||||||||||| ||||||||||    
T  7540502 tccatttcactaaaaagaagattaaaacttcaaaagaaaagctaataata 7540551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 34841644 - 34841826
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  34841644 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 34841743  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  |||||||||||||||||||||||| |||||||||||    
T  34841744 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaattctaataataag 34841826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 10886486 - 10886573
Alignment:
Q  143 gtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaat 230  Q
    ||||||||||||||||||||||||||||||||| ||| || |||| |||| |||||| ||| ||||||||||||||||||| ||||||    
T  10886486 gtaatcagaagaattttgggtgttgaattgattgttagtgggatctatttcactaaataaacactaaaacttcaaaagaaaggctaat 10886573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 6377376 - 6377233
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  6377376 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 6377277  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  6377276 ttattattgggatccatttcacaaaaaataagattaaaacttca 6377233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 17958244 - 17958101
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  17958244 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 17958145  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  17958144 ttattattgggatccatttcacaaaaaataagattaaaacttca 17958101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 34328613 - 34328700
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| || ||||||||| ||||||||| ||||||    
T  34328613 gataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatggttattattgggatccatttcactaaa 34328700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24348766 - 24348818
Alignment:
Q  184 gatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  24348766 gatctatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 24348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 634857 - 635000
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||  |  ||| ||||| |||| |||||||||||||||| ||     
T  634857 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtatttttatgggtaattagaaaaattttgggtgttgaaatgg 634956  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  634957 ttattattgggatccatttcacaaaaaataagattaaaacttca 635000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 30446521 - 30446590
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||| |||||||||||| ||| ||| |||||||||||| | |||| |||||||||||||||||||||||    
T  30446521 aatttggggtgttgaattaattgttagtgagatccatttcattaaataaagactaaaacttcaaaagaaa 30446590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 29951972 - 29951829
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| |||   | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||| |      
T  29951972 gttttgaggacgttggttaaaaaattgatttggaattagataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgaaatag 29951873  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  29951872 ttattattgggatccatttcacaaaaaataagattaaaacttca 29951829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 34242552 - 34242604
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| |||||||||||| |||||||| ||||| ||||    
T  34242552 aaaattgatttggattttgaggatgttggttgggaaattgatttgggttttga 34242604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 13479535 - 13479317
Alignment:
Q  18 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||    
T  13479535 aaactaagcatacaacacacaagtaattatttaagtataacttaaaattgatttgagttttgaagatattggttgggaaattgatttggctgttgataat 13479436  T
Q  118 tgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaa 217  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13479435 tgtaggggttttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgggatccattttactaaacaaagactaaaacttcaa 13479336  T
Q  218 aagaaatgctaataataag 236  Q
    || ||||||||||||||||    
T  13479335 aataaatgctaataataag 13479317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 32363355 - 32363180
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    |||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  32363355 aaaattgatttgggttttgaagatgttggtcggtaaattgatttaggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaatttta 32363256  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  32363255 ggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgcttttaataag 32363180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 25670657 - 25670529
Alignment:
Q  108 tgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagact 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  25670657 tgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagact 25670558  T
Q  208 aaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||    
T  25670557 aaaacttcaaaagaaatgctaataataag 25670529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 29616396 - 29616228
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||    
T  29616396 aattgatttggattttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaatggtagtcagaagaattttggg 29616297  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  29616296 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 29616228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 27406032 - 27405907
Alignment:
Q  111 tgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaa 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||    
T  27406032 tgataattgttgggattttggtagctaaatgggtaatcagaagaattttgggtgttgaattgattgttattgggatccatttcactaaataaagactaaa 27405933  T
Q  211 acttcaaaagaaatgctaataataag 236  Q
    ||||||||||||| ||||||||||||    
T  27405932 acttcaaaagaaaagctaataataag 27405907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 42804648 - 42804507
Alignment:
Q  95 aaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccatttta 194  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||| |    
T  42804648 aaattgatttgggtgttgataattgttgggattttggtagttaaaagggtaatcagaagaattttgggtgttgaattgattgttagtgagatccatttca 42804549  T
Q  195 ctaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||    
T  42804548 ctaaataaagactaaaacttcaaaagaaaagctaacaataag 42804507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 30644913 - 30644776
Alignment:
Q  94 aaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccatttt 193  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||| |||||||||     
T  30644913 aaaattgatttgggtgttgataattgttggaattttggtagctaaatgggtaattagaagaattttgggtgttgaattgattggtattgggatccatttc 30644814  T
Q  194 actaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
     ||||| | ||||||||||||||||||||| |||||||    
T  30644813 cctaaatagagactaaaacttcaaaagaaaagctaata 30644776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 39238794 - 39238894
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  39238794 taaatgagtaatcagaagaattttgggtgttgaattgattattattgggatccattttactaaacaaaaactaaaacttcaaaagaaatgcaaataataa 39238893  T
Q  236 g 236  Q
    |    
T  39238894 g 39238894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 4219228 - 4219139
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4219228 tcagaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 4219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 32973291 - 32973109
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  32973291 aattgatttgggttttgaggatgttggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 32973192  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  32973191 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 32973109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 23089794 - 23089883
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  23089794 tcagaagaattttgggtgttgaattgattattattgggatccatttcaataaacaaagactaaaacttcaaaagaaatgctaataataag 23089883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 27945789 - 27945971
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  27945789 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 27945888  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  27945889 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 27945971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 39008768 - 39008857
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39008768 tcagaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgttaataataag 39008857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 40891959 - 40892141
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      ||||||||| |||| | |||||||||||    
T  40891959 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagttaaaagggtaatcagaag 40892058  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  40892059 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 40892141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 7827290 - 7827432
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||||||||||| |||    
T  7827290 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttgggtgttgaaatga 7827389  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||| ||||| |||||| | |||| ||||||||||    
T  7827390 ttattattgagat-catttcactaaaaataagattaaaacttca 7827432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 21367763 - 21367906
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||| |||  ||| |||||| ||||| |||| |||||||||||||||| ||     
T  21367763 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggaatttaatagttaaatgggtaattagaataattttgggtgttgaaatgg 21367862  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  21367863 ttattattgggatccatttcactaaaaataagattaaaacttca 21367906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 25033363 - 25033486
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| | |||||||||||||| ||     
T  25033363 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaaaatttttgggtgttgaaatgg 25033462  T
Q  174 ttattattgagatccattttacta 197  Q
    ||||||||| ||||||||| ||||    
T  25033463 ttattattgggatccatttcacta 25033486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 31011975 - 31011832
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  31011975 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 31011876  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  31011875 ttattattgggatccatttcacaaaaaataagattaaaacttca 31011832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 41152760 - 41152646
Alignment:
Q  85 gttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgag 184  Q
    |||||||| ||||||||| ||| | | |||||||||||| ||||  |||| |||||| ||||| |||| |||||| ||||||||| || |||||||||||    
T  41152760 gttggttgaaaaattgatttggatttggataattgttggaatttccgtagttaaatgggtaattagaataattttaggtgttgaaatggttattattgag 41152661  T
Q  185 atccattttactaaa 199  Q
    |||||||| ||||||    
T  41152660 atccatttcactaaa 41152646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 3455111 - 3455179
Alignment:
Q  168 aattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| |||||    
T  3455111 aattgattattattgggatccatttcattaaacaaagactaaaacttcaaaagaaattctaattataag 3455179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 4580184 - 4580327
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| | |||||||||||||| ||     
T  4580184 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaatttttgggtgttgaaatgg 4580283  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  4580284 ttattattgggatccatttcacaaaaaataagattaaaacttca 4580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 36572215 - 36572146
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||| |||||||||||||||| ||| || ||||||||| |||||| |||||||||||||||||||||||    
T  36572215 aatttggggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaacttcaaaagaaa 36572146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 36609830 - 36609952
Alignment:
Q  110 ttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagacta 208  Q
    |||||||||||||||| |||| ||||||||||  |||| ||||| ||| | |  ||||||  |||||||||||  |||||||| |||||| | |||| ||    
T  36609830 ttgataattgttgggagtttgatagctaaatggataattagaagtattctagacgttgaaaggattattattggaatccatttcactaaaaagaagatta 36609929  T
Q  209 aaacttcaaaagaaatgctaata 231  Q
    ||||||||||||||| |||||||    
T  36609930 aaacttcaaaagaaaagctaata 36609952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 32363391 - 32363336
Alignment:
Q  58 cttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||    
T  32363391 cttaaaattgatttggattttgaggatgttggttggaaaattgatttgggttttga 32363336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 15972845 - 15972934
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgctaataa 232  Q
    |||| ||||||||| | ||||||||| ||||||||||||| |||||||| |||||| | |||  |||||||||||||||||  |||||||    
T  15972845 taattagaagaattctaggtgttgaaatgattattattgaaatccatttcactaaaaagaagtttaaaacttcaaaagaaaatctaataa 15972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 177400 - 177476
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaa 219  Q
    |||| ||||||||| ||||||||||| | |||||||||| |||||||||||| ||| | |||| |||||||||||||    
T  177400 taattagaagaattatgggtgttgaaattattattattgggatccattttaccaaaaagaagattaaaacttcaaaa 177476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 13592713 - 13592652
Alignment:
Q  170 ttgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||  || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  13592713 ttgattatttctgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 13592652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 29616458 - 29616408
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  29616458 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 29616408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 30645824 - 30645786
Alignment:
Q  64 attgatttgggttttgaagatgttggttggaaaattgat 102  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  30645824 attgatttgggttttgaggatgttggttgaaaaattgat 30645786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 7651290 - 7651322
Alignment:
Q  201 aaagactaaaacttcaaaagaaatgctaataat 233  Q
    ||||||||||||||||||||||| |||||||||    
T  7651290 aaagactaaaacttcaaaagaaaagctaataat 7651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 25032678 - 25032706
Alignment:
Q  17 aaaactaagcatacaacacacaagtaatt 45  Q
    |||||||||||||||||||||||||||||    
T  25032678 aaaactaagcatacaacacacaagtaatt 25032706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 41263689 - 41263749
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||| || ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  41263689 tttgggtgttgaaatggttattattgggatccatttaactaaaaataagattaaaacttca 41263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 13947636 - 13947811
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  13947636 aaaattgatttgggttttgaagatgttggttgggaaattgatttggttgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttt 13947735  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13947736 ggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 13947811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 13784086 - 13783913
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13784086 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttag 13783987  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  13783986 gtgttgaattgattattattgggatccatttcactaaacaaaaactagaacttcaaaagaaatgctaataataa 13783913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 1633314 - 1633139
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  1633314 aaaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttgatagctaaatggataatcagaagaattttg 1633215  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1633214 ggtgttaaattgattattgttgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaattataag 1633139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 43524146 - 43523984
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  43524146 aaaattgattttggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtaggtaaatggataatcagaagaattttg 43524047  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    |||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||    
T  43524046 ggtgttgaattgattattattgggatctatttcactaaacaaacactaaaacttcaaaagaaa 43523984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 15056749 - 15056917
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  15056749 aattgatttgggttttgaggatgttggttggaaaattgatttgggtgttgataattgttgggattttggtagttaaaagggtaatcagaagaattttggg 15056848  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| |||||||||||||| |||||||| |||||||    
T  15056849 tgttgaattgattgttagtgggatccatttcactaaataaagactaaaactttaaaagaaaagctaata 15056917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 38205126 - 38204958
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    |||||||||||||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  38205126 aaaattgatttgggttttcaagatgttggttgagaaattgatttgggtgttgataattgttgggattttggtagctaaatggataatcaaaagaattttg 38205027  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaa 229  Q
    | || ||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||| ||||    
T  38205026 gatggtgaattgattattattaggatccatttcactaaataaagactaaaacttcaaaagaaatactaa 38204958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 30529531 - 30529369
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||  |||||||||||||||||||    
T  30529531 aaattgatttgggttttgaagatgttggttgggaaattgata------------attgttgggattttggtagctaaataggtaatcagaagaattttgg 30529444  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  30529443 gtgttgaattgattattattgggatccatttcacttaataaagactaaaacttcaaaagaaatgctaataataag 30529369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 26244877 - 26244977
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  26244877 taaatgagtaatcagaagaattttgggtgttgaattgattattattgggatccattttactaaacaaaaactaaaacttcaaaagaaatgcaaataataa 26244976  T
Q  236 g 236  Q
    |    
T  26244977 g 26244977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 40283855 - 40283955
Alignment:
Q  136 taaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  40283855 taaatgagtaatcagaagaattttgggtgttgaattaattattattgggatccattttcctaaacaaagactaaaactttaaaagaaatgctaataataa 40283954  T
Q  236 g 236  Q
    |    
T  40283955 g 40283955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 1955155 - 1954972
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaa 152  Q
    ||||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | ||||||||||    
T  1955155 aaattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaa 1955056  T
Q  153 gaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  1955055 gaattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 1954972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 29731938 - 29732031
Alignment:
Q  143 gtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29731938 gtaattagaagaattttgggtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 29732031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 44150158 - 44150247
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  44150158 tcagaagaactttgggtgttgaattgattattattgggatccatttcaataaacaaagactaaaacttcaaaagaaatgctaataataag 44150247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 44503519 - 44503611
Alignment:
Q  144 taatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||  |||||||    
T  44503519 taatcagaagaattttgggtgttgaattgattattattgagatccatttcactaaacaaatattaaaacttcaaaagaaatgcttttaataag 44503611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 27392651 - 27392769
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||| ||     
T  27392651 gttttgaggacgttggttggaaaattgatttggattttgataattgttgggattttggtagttaaatgggtaattagaataattttgggtgttgaaatgg 27392750  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||| |||||||||    
T  27392751 ttattattgggatccattt 27392769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 23550002 - 23550090
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  23550002 tcagaagaattt-gggtgttgaattgattattattgggatccatttcactaatcaaagactaaaacttcaaaagaaatgctaataataag 23550090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 8449931 - 8449788
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  8449931 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 8449832  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  8449831 ttattattgggatccatttcactaaaaataagattaaaacttca 8449788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 35101572 - 35101715
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  35101572 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 35101671  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  35101672 ttattattgggatccatttcactaaaaataagattaaaacttca 35101715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 36912745 - 36912886
Alignment:
Q  76 tttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgatt 175  Q
    ||||| || |||||||| |||||| || ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||||||||||| || ||    
T  36912745 tttgaggacgttggttgaaaaattcatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttgggtgttgaaatggtt 36912844  T
Q  176 attattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||| ||||||||| |||||| | |||| ||||||||||    
T  36912845 attattgggatccatttcactaaaaataagattaaaacttca 36912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 17744753 - 17744871
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| ||| ||||||| ||||||||| ||| | | |||||||||||||||||| |||| ||||||| | || |||| |||||||||||||||| ||     
T  17744753 gttttgaggatattggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgaattattagaataattttgggtgttgaaatgg 17744852  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||| |||| ||||    
T  17744853 ttattattgggatcaattt 17744871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 13817226 - 13817369
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | ||||||||||||||||||  ||| || |||  |||| |||| |||||||||||||||| ||     
T  13817226 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcatagttatatggataattagaaaaattttgggtgttgaaatgg 13817325  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  13817326 ttattattgggatccatttcacaaaaaataagattaaaacttca 13817369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 12272274 - 12272197
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||| |||||||||||||||| ||| || ||||||||| |||||| |||||||||||||| |||||||| |||||||    
T  12272274 aatttggggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaactttaaaagaaaagctaata 12272197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 26748856 - 26748740
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | ||||||||||||||||||   || |||||| ||||| |||| || ||||||||||||| ||     
T  26748856 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcaaagttaaatgggtaattagaaaaaatttgggtgttgaaatgg 26748757  T
Q  174 ttattattgagatccat 190  Q
    ||||||||| |||||||    
T  26748756 ttattattgggatccat 26748740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 31129249 - 31129178
Alignment:
Q  155 attttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaa 229  Q
    |||||||||||||||||||||||||| |   ||||||| |||||| ||||||||||||||||||||||| |||||    
T  31129249 attttgggtgttgaattgattattatgg---tccatttcactaaataaagactaaaacttcaaaagaaaagctaa 31129178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 5736204 - 5736347
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| |   |||||||||||| ||||| |||| |||||| ||||  |||| |||||||||  ||||| ||     
T  5736204 gttttgaggacgttggttgaaaaattgatttggattgggataattgttggaattttcgtagttaaatgggtaactagaataattttggggattgaaatgg 5736303  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    || |||||| ||||||||| |||||| | |||| ||||||||||    
T  5736304 ttgttattgggatccatttcactaaaaataagattaaaacttca 5736347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 18029160 - 18029100
Alignment:
Q  157 tttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||| || ||||||||||||||||||| |||||| | |||| ||||||||||    
T  18029160 tttgggtgttgaaatggttattattgagatccatttcactaaaaataagattaaaacttca 18029100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 5213972 - 5214115
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| | ||   |||||||||||||  ||     
T  5213972 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattaaaatttttttgggtgttgagatgg 5214071  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| |||| |||| || ||| | |||| ||||||||||    
T  5214072 ttattattgggatcgatttcacaaaaaataagattaaaacttca 5214115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 34955192 - 34955105
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||| ||||  |||| ||||||| |  ||||| || || |||||| ||||||||| ||||||    
T  34955192 gataattgttgggattttcgtagttaaatgggtaactagaataattttgaggattgaaatggttgttattgggatccatttcactaaa 34955105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 38205159 - 38205112
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggt 108  Q
    ||||||||||||| |||||| |||||||||| |||||||||| |||||    
T  38205159 aaaattgatttggattttgaggatgttggtttgaaaattgatttgggt 38205112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 1955187 - 1955137
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||    
T  1955187 aattgatttgggttttgaggatattggttgggaaattgatttgggttttga 1955137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 13947607 - 13947655
Alignment:
Q  65 ttgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||| |||||| ||||||||||| ||||||||| ||||| ||||    
T  13947607 ttgatttggattttgaggatgttggttgaaaaattgatttgggttttga 13947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 7763077 - 7762903
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  7763077 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgaaattttggtagctaaatgggtaatcagaagaattttgg 7762978  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  7762977 gtgttgaattgattattattgggatccatttcacgaaacaaagactaaaacttcaaaagaaatgctaataataag 7762903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 6363565 - 6363735
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6363565 aaattgatttgggttttgaggatgtcggttggaaaattgatttgcgtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgg 6363664  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataa 232  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||  |||||||    
T  6363665 gtgttgaattgattattattgggatccattttactaaataaagactaaaacttcaaaagaaaatctaataa 6363735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 5145272 - 5145098
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  ||||| | || ||||||||    
T  5145272 aaattgatttgggttttgaagatgttggttggaaaattgatttgggtgttgataattgtttggattttggtagctaaataggtaattaaaaaaattttgg 5145173  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||    
T  5145172 gtgttgaattgattattattgagatctatttcactaaataaagactaaaacatcaaaagaaatgctaataataag 5145098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 4279268 - 4279442
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||| ||||||  ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  4279268 aaattgatttggattttgagtatgttggttgggaaattgatttgggtgttgataatggttgggattttggtagctaaatgggtaatcagaataattttgg 4279367  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||| || |||||| |||||| |||| |||||||||||||||||| ||||||||||||    
T  4279368 gtgttgaattgattattattgtgagccatttcactaaataaagtctaaaacttcaaaagaaaagctaataataag 4279442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 17929080 - 17928928
Alignment:
Q  84 tgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattga 183  Q
    |||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||     
T  17929080 tgttggttgggaaattgatttgtgtgttgataattgttgagattttggtagctaaatggataatcagaagaattttgggtgttgaattgattattattgg 17928981  T
Q  184 gatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||||    
T  17928980 gatccatttcactaaacaaagactaaaacttcaaaataaatgcaaataataag 17928928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 22349806 - 22349638
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  22349806 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 22349707  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  22349706 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 22349638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 36209333 - 36209184
Alignment:
Q  86 ttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgaga 185  Q
    |||||||| |||||||| |  |||||||||||||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||||||||||| ||    
T  36209333 ttggttgggaaattgatttaagtgttgataattgttgggatttagttagctaaatggataatcagaagaattttgggtgttgaattgattattattggga 36209234  T
Q  186 tccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36209233 tccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataa 36209184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 1308491 - 1308402
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1308491 tcagaagaattttgggtgttgaattgattattattgggatacatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 1308402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 7585437 - 7585255
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  7585437 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 7585338  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  7585337 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 7585255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 17486102 - 17486191
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17486102 tcagaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaatattaag 17486191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 39490326 - 39490415
Alignment:
Q  86 ttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgatt 175  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39490326 ttggttgggaaattgatttgagtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgatt 39490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 2779045 - 2778902
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    |||||||||| |||||||| ||||||||| | | | | |||||||||||||||||| |||| ||||||  |||| |||| |||||||||||||||| |||    
T  2779045 gttttgaagacgttggttgaaaaattgatttcgatttggataattgttgggattttcgtagttaaatggataattagaataattttgggtgttgaaatga 2778946  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||||||||||||| |||||| | |||| ||||||||||    
T  2778945 ttattattgagatccatttcactaaaaataagattaaaacttca 2778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 8855174 - 8855317
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  8855174 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 8855273  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  8855274 ttattattgggatccatttcactaaaaataagattaaaacttca 8855317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 31185183 - 31185040
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | ||||||||||||||||||  ||| |||||| ||||| |||| |||||||||||||||| ||     
T  31185183 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttattagttaaatgggtaattagaataattttgggtgttgaaatgg 31185084  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  31185083 ttattattgggatccatttcactaaaaataagattaaaacttca 31185040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 31204909 - 31204766
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| ||  |||||||||||||||||| |||| |||||| ||||| |||| |||||| ||||||||| ||     
T  31204909 gttttgaggacgttggttgaaaaattgatttggatgaggataattgttgggattttcgtagttaaatgggtaattagaataatttttggtgttgaaatgg 31204810  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  31204809 ttattattgggatccatttcactaaaaataagattaaaacttca 31204766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 37245831 - 37245972
Alignment:
Q  76 tttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgatt 175  Q
    ||||| || |||||||| |||||| || ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||||||||||| || ||    
T  37245831 tttgaggacgttggttgaaaaattcatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttgggtgttgaaatggtt 37245930  T
Q  176 attattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||| ||||||||| |||||| | |||| ||||||||||    
T  37245931 attattgggatccatttcactaaaaataagattaaaacttca 37245972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 36855300 - 36855175
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||  ||| | | |||||||||||||||||| |||  |||||| ||||| |||| |||||||||||||||| |||    
T  36855300 gttttgaggacgttggttgaaaaattgaattggatttggataattgttgggattttcgtaattaaatgggtaattagaaaaattttgggtgttgaaatga 36855201  T
Q  174 ttattattgagatccattttactaaa 199  Q
    ||| ||||| ||||||||| ||||||    
T  36855200 ttactattgggatccatttcactaaa 36855175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 39432656 - 39432535
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | ||||||||||| |||||| |||| |||| | ||||| |||| |||||||||||||||| ||     
T  39432656 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgcgattttcgtagttaaaggggtaattagaaaaattttgggtgttgaaatgg 39432557  T
Q  174 ttattattgagatccattttac 195  Q
    ||||||||| ||||||||||||    
T  39432556 ttattattgggatccattttac 39432535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 12858066 - 12858209
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  12858066 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 12858165  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  12858166 ttattattgggatccatttcacaaaaaataagattaaaacttca 12858209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 30819563 - 30819420
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  30819563 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 30819464  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  30819463 ttattattgggatccatttcacaaaaaataagattaaaacttca 30819420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 9072866 - 9072748
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  9072866 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 9072767  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||| |||||||||    
T  9072766 ttattattgggatccattt 9072748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 926746 - 926621
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | ||||||||||| |||||| | || |||||||| ||| |||| |||||||||||||||| |      
T  926746 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgagattttcgcagttaaatgagaaattagaataattttgggtgttgaaattg 926647  T
Q  174 ttattattgagatccattttactaaa 199  Q
    ||||||||||||| ||||| ||||||    
T  926646 ttattattgagattcatttcactaaa 926621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 1072876 - 1072799
Alignment:
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||| |||||||||||||||| ||| || ||||||||| |||||| |||||||||||||| |||||||| |||||||    
T  1072876 aatttggggtgttgaattgattgttagtgggatccatttcactaaataaagactaaaactttaaaagaaaagctaata 1072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 16218569 - 16218467
Alignment:
Q  128 ttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgc 226  Q
    |||||||| |||||   ||| ||||||||| |||||||||||  ||||||||||| |||||| || |||||| | |||| ||||||||||||||||| ||    
T  16218569 ttggtagcaaaatggaaaattagaagaattatgggtgttgaaaggattattattgggatccaattcactaaaaagaagattaaaacttcaaaagaaaagc 16218470  T
Q  227 taa 229  Q
    |||    
T  16218469 taa 16218467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 39490482 - 39490428
Alignment:
Q  168 aattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaa 222  Q
    |||||||||||||||  |||||||| |||||| ||||||||||||||||||||||    
T  39490482 aattgattattattggaatccatttcactaaagaaagactaaaacttcaaaagaa 39490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 6333059 - 6333012
Alignment:
Q  188 cattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    ||||| |||||| ||||| ||||||||||||||||| |||||||||||    
T  6333059 catttcactaaaaaaagattaaaacttcaaaagaaaagctaataataa 6333012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 13151338 - 13151304
Alignment:
Q  202 aagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||| ||||||||||||    
T  13151338 aagactaaaacttcaaaagaaaagctaataataag 13151304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 44280391 - 44280444
Alignment:
Q  170 ttgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    |||||||||  || ||||||||| |||||| ||| |||||||||||||||||||    
T  44280391 ttgattatttctgggatccatttcactaaataaacactaaaacttcaaaagaaa 44280444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 14009592 - 14009671
Alignment:
Q  117 ttgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttacta 197  Q
    |||||||||||| ||||| | || | ||||| || ||||||||||||||| || || ||||| ||| ||||||||||||||    
T  14009592 ttgttgggatttgggtagttgaaag-gtaattagtagaattttgggtgttaaaatgtttattgttgggatccattttacta 14009671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 43021965 - 43022025
Alignment:
Q  171 tgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||| ||| || ||| ||||| |||||| ||| ||||||||||||||||||| |||||||    
T  43021965 tgattgttagtgggattcatttcactaaataaacactaaaacttcaaaagaaaggctaata 43022025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 29524076 - 29524250
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29524076 aaattgatttggattttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttgg 29524175  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  29524176 gtgttgaattgattattattgggatacatttcactaaacaaagattaaaacttcaaaagaaatgctaataataag 29524250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 51156579 - 51156405
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  51156579 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttggaattttgatagctaaatgggtaatcagaagaattttgg 51156480  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  51156479 gtgttaaattgattattattgagatccatttcactaaacaaagactaaaacttcaaaagaaatgctaattataag 51156405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 45363654 - 45363828
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  45363654 aaattgatttggattttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaatgggtaatctgaagaattttgg 45363753  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45363754 gtgttgaatttattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 45363828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 47297485 - 47297312
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||  |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47297485 aattgatttgggttttgaggatgttggttgagaaattgatttgagtgttgataattgttgggattttggtagccaaatgagtaatcagaagaattttggg 47297386  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||    
T  47297385 tgttgaattgattgttattgagatccatttcactgaataaagactaaaacttcaaaagaaaagctaataataag 47297312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 51523442 - 51523612
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  51523442 aaattgatttgggttttgaggatgttggttgggaaattgatttgggtattgataattgttgggattttggtagctaaatgggtaatcataaaaattttgg 51523541  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataa 232  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  51523542 gtgttgaattgattattattgggatccatttcactaaataaagactaaaacttcaaaagaaaagctaataa 51523612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 33167388 - 33167565
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||    
T  33167388 aaattgatttggattttgaggatgtttgttggaaaattgatttgggtgttgataattgttgggatttcggtagctaaatgggtaatcaaaagaattttgg 33167487  T
Q  162 gtgttgaattg---attattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||   |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  33167488 gtgttgaattgattattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgttaataataag 33167565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 17676247 - 17676081
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17676247 aattgatttggtttttgaggatgttggttgtgaaattgatttgggtgttgataattgttgggattttggtagctaaatgggtaatcagaagaattttggg 17676148  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaat 230  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  17676147 tgttgaattgattgttattg-gatccatttcactaaataaagactaaaacttcaaaagaaaagctaat 17676081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 31159599 - 31159767
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagct-aaatgagtaatcagaagaattttgg 161  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  31159599 aattgatttggattttgaggatgttggttggaaaattgatttgggtgttgataattgttgggattttggtagctaaaatga-taatcggaagaattttgg 31159697  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||||||||||||| ||| || ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  31159698 gtgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaatgctaata 31159767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 48385083 - 48384915
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  48385083 aattgatttgggttttgaggatgttggttgggaaattgatttgggtgttgataattgtttggattttggtagctaaaatggtaatcagaagaattttggg 48384984  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||| ||| || ||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  48384983 tgttgaattgattgttagtgggatccatttcactaaataaacactaaaacttcaaaagaaaggctaata 48384915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 8471413 - 8471562
Alignment:
Q  86 ttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgaga 185  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||    
T  8471413 ttggttggaaaattgatttgggtgttgataattattggggttttggtagctaaatgggtaattagaagaattttgggtgttgaattgattgttattg-ga 8471511  T
Q  186 tccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  8471512 tccatttcactaaataaagactaaaacttcaaaagaaatgctaataataag 8471562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 48407536 - 48407704
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| | |||||||||| | |||||||    
T  48407536 aattgatttggattttgaggatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagttaaaagggtaatcagaaaatttttggg 48407635  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||| ||| ||| || || || ||| |||||| ||||||||||||||||||||||| |||||||    
T  48407636 tgttgaattaattgttagtgggacccgtttcactaaataaagactaaaacttcaaaagaaaagctaata 48407704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 18317714 - 18317589
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||    
T  18317714 gttttgaggatgttggttgggaaattgatttggatgttgataattgttgggattttggtagctaaatgggtaatcagaagaattctgggtgtttaaatga 18317615  T
Q  174 ttattattgagatccattttactaaa 199  Q
    ||||||||| ||||||||| ||||||    
T  18317614 ttattattgggatccatttcactaaa 18317589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 45455719 - 45455626
Alignment:
Q  143 gtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45455719 gtaatcaaaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 45455626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 36231138 - 36231264
Alignment:
Q  109 gttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagacta 208  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| || || |||||| ||||||||| |||||| ||||||||    
T  36231138 gttgataattgttgggattttggtagctaaatgggtaatttgaagaattttgggtgttgaactg-ttgttattgggatccatttcactaaataaagacta 36231236  T
Q  209 aaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||  |||||||||||    
T  36231237 aaacttcaaaagaaaaactaataataag 36231264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 2475027 - 2474845
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataatt---gttggga------ttttggtagctaaatgagtaatcagaag 153  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||  ||    |||||||      |||||||||||||| | |||||||||||    
T  2475027 aattgatttgggttttgaggatattggttgggaaattgatttgggttttgaggatgtgagttgggaaattgattttggtagctaaaagggtaatcagaag 2474928  T
Q  154 aattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  2474927 aattttgggtgttggattgattgttagtgggatccatttcactaattaaagactaaaacttcaaaagaaatgctaataataag 2474845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 31471363 - 31471507
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| ||     
T  31471363 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatgg 31471462  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttcaa 217  Q
    ||||||||| ||||||||| |||||| | |||| |||||||||||    
T  31471463 ttattattgggatccatttcactaaaaataagattaaaacttcaa 31471507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 45242227 - 45242370
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||  ||||||||| ||| | | |||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||| ||     
T  45242227 gttttgaggacgttggttataaaattgatttggatttggataattgttgggattttcgtagttatatgggtaattagaaaaattttgggtgttgaaatgg 45242326  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| || ||| | |||| ||||||||||    
T  45242327 ttattattgggatccatttcacaaaaaataagattaaaacttca 45242370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 52930589 - 52930446
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||| | | |||||||||||||||||| |||| ||||||  |||| |||| |||||||||||||||| ||     
T  52930589 gttttgaggacgttggttgaaaaattgatttggatttggataattgttgggattttcgtagttaaatggataattagaaaaattttgggtgttgaaatgg 52930490  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||| ||||| || ||| | |||| ||||||||||    
T  52930489 ttattattgggatacatttcacaaaaaataagattaaaacttca 52930446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 37822901 - 37822953
Alignment:
Q  184 gatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37822901 gatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 37822953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 37420083 - 37419996
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||| ||||| |||| |||||||| ||||||| || ||||||||| ||||||||| ||||||    
T  37420083 gataattgttgggattttcgtagttaaatgggtaattagaataattttggttgttgaaatggttattattgggatccatttcactaaa 37419996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 30878420 - 30878353
Alignment:
Q  169 attgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||| ||||||||| |||||  |||||||||||||||||||||||  |||||||||||    
T  30878420 attgattattattgggatccatttcactaagtaaagactaaaacttcaaaagaaaatctaataataag 30878353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 48927133 - 48927216
Alignment:
Q  149 agaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaatgctaata 231  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||| | || | |||||||||||| |||| |||||||    
T  48927133 agaagaattttgggtgttgaaatgattattattgggatccatttcactaaaaagaatattaaaacttcaaatgaaaagctaata 48927216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 17786420 - 17786538
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || |||||||| ||||||||| ||  | | ||||||||||||||||||  ||| |||||| ||||| | || |||||||||||||||| ||     
T  17786420 gttttgaggacgttggttgaaaaattgatttgcatttggataattgttgggattttcatagttaaatgggtaattaaaaaaattttgggtgttgaaatgg 17786519  T
Q  174 ttattattgagatccattt 192  Q
    ||||||||  |||||||||    
T  17786520 ttattatttggatccattt 17786538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 36303329 - 36303421
Alignment:
Q  132 tagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    ||||||||||| |||| ||||||||| | | ||||||| |||||||||||| ||||||||| |||||| | |||  |||||||||||||||||    
T  36303329 tagctaaatgattaattagaagaattctagatgttgaaatgattattattgggatccatttcactaaaaagaagtttaaaacttcaaaagaaa 36303421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 48729669 - 48729761
Alignment:
Q  132 tagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    ||||||||||| |||| ||||||||| | | ||||||| |||||||||||| ||||||||| |||||| | |||  |||||||||||||||||    
T  48729669 tagctaaatgattaattagaagaattctagatgttgaaatgattattattgggatccatttcactaaaaagaagtttaaaacttcaaaagaaa 48729761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 27630199 - 27630112
Alignment:
Q  112 gataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgattattattgagatccattttactaaa 199  Q
    |||||||||||||||||| |||| |||||  ||||| |||| |||||||  ||||||| || ||||||||| ||||||||| ||||||    
T  27630199 gataattgttgggattttcgtagttaaataggtaattagaataattttgtttgttgaaatggttattattgggatccatttcactaaa 27630112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 51156619 - 51156561
Alignment:
Q  55 taacttaaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||||||||| |||||| ||| |||||||| |||||||| ||||| ||||    
T  51156619 taacttaaaattgatttggattttgaggattttggttgggaaattgatttgggttttga 51156561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 48385116 - 48385066
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||| ||||    
T  48385116 aattgatttgggttttgaggatgttggttggggaattgatttgggttttga 48385066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 10265810 - 10265770
Alignment:
Q  191 tttactaaacaaagactaaaacttcaaaagaaatgctaata 231  Q
    |||| |||| ||||||||||||||||||||||| |||||||    
T  10265810 tttattaaataaagactaaaacttcaaaagaaaagctaata 10265770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 444 - 619
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttg 160  Q
    ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||    
T  444 aaaattgatttgggtttagaagatgttggttgggaaattgatttgggtgttgataattgttgggattttggtagctaaaagtataatgagaagaattttg 543  T
Q  161 ggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  544 ggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataag 619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 110108 - 109941
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  110108 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttggaattttgatagctaaatgggtaatcagaagaattttgg 110009  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaa 229  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  110008 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaa 109941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 106010 - 106184
Alignment:
Q  62 aaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgg 161  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  106010 aaattgatttgggttttgaagatgttggttgggaaattgatttgggtgttgataattgttgggattttgatagccaaatgggtaatcagaagaattttgg 106109  T
Q  162 gtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataag 236  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||  |||||| |||||    
T  106110 gtgttaaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaatggctaattataag 106184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 105976 - 106028
Alignment:
Q  61 aaaattgatttgggttttgaagatgttggttggaaaattgatatgggtgttga 113  Q
    ||||||||||||| |||||| ||| |||||||| |||||||| ||||| ||||    
T  105976 aaaattgatttggattttgaggattttggttgggaaattgatttgggttttga 106028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 95 - 255
Alignment:
Q  63 aattgatttgggttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttggg 162  Q
    ||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  95 aattgatttggattttgaggatgttggttgggaaattgatttgggtgttgataattgttggaattttggtagctaaaagggtaatcagaagaattttggg 194  T
Q  163 tgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaa 223  Q
    ||||||  ||||| ||| || ||||||||| |||||| |||||||||||||||||||||||    
T  195 tgttgatatgattgttagtgggatccatttcactaaataaagactaaaacttcaaaagaaa 255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 1244 - 1156
Alignment:
Q  147 tcagaagaattttgggtgttgaattgattattattgagatccattttactaaacaaagactaaaacttcaaaagaaatgctaataataa 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1244 tcagaagaattttgggtgttgaattgattattattgggatccatttcactaaacaaagactaaaacttcaaaagaaatgctaataataa 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 166282 - 166133
Alignment:
Q  75 ttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattgat 174  Q
    |||||| || ||||||||||  |||||| ||  | ||||||||||||||||||||||||| ||||||  |||| || ||||||||||||||||||  |||    
T  166282 ttttgaggacgttggttggacgattgatttgaattttgataattgttgggattttggtagttaaatggataattagcagaattttgggtgttgaaaggat 166183  T
Q  175 tattattgagatccattttactaaaca-aagactaaaacttcaaaagaaa 223  Q
    |||||||||||| ||||| |||||| | |||| |||||||||||||||||    
T  166182 tattattgagattcatttcactaaaaagaagattaaaacttcaaaagaaa 166133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 6614 - 6471
Alignment:
Q  74 gttttgaagatgttggttggaaaattgatatgggtgttgataattgttgggattttggtagctaaatgagtaatcagaagaattttgggtgttgaattga 173  Q
    ||||||| || | |||||| ||||||||| ||  | |||||||||||| | ||||| |||| |||||| ||||| |||| |||||| ||||||||| ||     
T  6614 gttttgaggacgctggttgaaaaattgatttgaattttgataattgtttgaattttcgtagttaaatgggtaattagaataatttttggtgttgaaatgt 6515  T
Q  174 ttattattgagatccattttactaaaca-aagactaaaacttca 216  Q
    ||||||||| ||||||||| |||||| | |||| ||||||||||    
T  6514 ttattattgggatccatttcactaaaaataagattaaaacttca 6471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University