View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_high_9 (Length: 552)

Name: NF14572_high_9
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_high_9
NF14572_high_9
[»] chr8 (4 HSPs)
chr8 (21-541)||(25221239-25221763)
chr8 (21-537)||(26172687-26173207)
chr8 (46-296)||(26397484-26397731)
chr8 (443-487)||(1908220-1908264)
[»] chr4 (4 HSPs)
chr4 (21-537)||(8352537-8353063)
chr4 (41-100)||(41242340-41242399)
chr4 (444-497)||(21074751-21074804)
chr4 (52-100)||(49463218-49463266)
[»] chr6 (1 HSPs)
chr6 (41-100)||(28130721-28130780)
[»] chr2 (1 HSPs)
chr2 (443-481)||(8509654-8509692)
[»] chr7 (4 HSPs)
chr7 (384-417)||(5843640-5843673)
chr7 (448-497)||(13043504-13043553)
chr7 (41-109)||(29464909-29464977)
chr7 (444-480)||(34605344-34605380)


Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 21 - 541
Target Start/End: Original strand, 25221239 - 25221763
Alignment:
Q  21 tgacatgtattctgctaagctaatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25221239 tgacatgtattctgctaagctaatatctctatagattggtgggttctcttctgagaccaattctttaataggaccataaatcattgatgaagctttatca 25221338  T
Q  121 agatcatgagaagttccaaagaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgaca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25221339 agatcatgagaagttccaaagaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgaca 25221438  T
Q  221 caagctgcacgattaacaaataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaattttctccaaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25221439 caagctgcacgattaacaaataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaattttctccaaa 25221538  T
Q  321 attcag--gnnnnnnnaaccctctagctct---nnnnnnnggggaacccggtatttcaaagtttggtcagaggtaagtaaagtttgactaaaaattgttc 415  Q
    ||||||          ||||||||||||||          ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25221539 attcagttttttttttaaccctctagctctaaaaaaaaaaggggaacccggtatttcaaagcttggtcagaggtaagtaaagtttgactaaaaactgttc 25221638  T
Q  416 catcaagaatcaaggtgaggttttgcgaaacaattcgtcattgatgaaactcgttaactacttgagctcaattacttagttaattcagctcattttatat 515  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25221639 catcaagaatcaaagtgagattcttcgaaacaattcgtcattgatgaaactcgttaactacttgagctcaatta-ttagttaattcagctcattttatat 25221737  T
Q  516 ggattgaattgtttatttatattcat 541  Q
    ||||||||||||||||||||||||||    
T  25221738 ggattgaattgtttatttatattcat 25221763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 537
Target Start/End: Complemental strand, 26173207 - 26172687
Alignment:
Q  21 tgacatgtattctgctaagctaatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatca 120  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| ||     
T  26173207 tgacatgaattctcctaagctagtatctctatagattggtgggttctcttctgataacaattctttaataggaccataaatcgttgatgaagctttctcc 26173108  T
Q  121 agatcatgagaagttccaaagaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgaca 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |    
T  26173107 agatcatgagaatttccaaagaaggcagctacagaaactcttgggcctttatgatttgataacacccgatgataaacactactaaaattgtcatttgata 26173008  T
Q  221 caagctg-cacgattaacaaataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttca--attttctcc 317  Q
     ||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||   |||| | |    
T  26173007 taagctgtaaagattaacaaataaattgatataagtatatattcgttacaatgatatctaattaactatgaattatgacaataatttcatttttttatac 26172908  T
Q  318 aaaattcaggnnnnnnnaaccctctagctct-nnnnnnnggggaacccggtatttcaaagtttggtcagaggtaagtaaagtttgactaaaaattgttcc 416  Q
    |||||||          |||||||||| |||         |||| || |||||||   ||||||||||||||||| | |||| ||||||||||||||||     
T  26172907 aaaattcttttttttttaaccctctagttctaaagaaaaagggaccctggtatttttgagtttggtcagaggtaaatgaagtatgactaaaaattgttct 26172808  T
Q  417 atcaagaatcaaggtgaggttttgcgaaacaattcgtcattgatgaaactcgttaactacttgagctcaattacttagttaattcagctcattttatatg 516  Q
    ||||| |||||| || || || | | ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||| ||||||| ||||||||||||||     
T  26172807 atcaaaaatcaaagtcagattatccaaaataattcatcattgatgaaactcattaaccacttgaactcaattacttggttaatttagctcattttatata 26172708  T
Q  517 gattgaattgtttatttatat 537  Q
    ||||||||||| |||||||||    
T  26172707 gattgaattgtatatttatat 26172687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 26397731 - 26397484
Alignment:
Q  46 tctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaaagaagg 145  Q
    ||||| ||||| |||||| | |||||||| | |||||  || |||||||| |||| | |||| |||| || ||| | ||||| |  | ||||||||||      
T  26397731 tctctgtagatcggtgggatttcttctgataacaatttctttataggaccgtaaacctttgacgaagattcatccaaatcataaagatttccaaagaaat 26397632  T
Q  146 cagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaaataaat 245  Q
     |||||||||||||||||| ||||||| | || |||  || |||||| |||||||    |||||||||||||  | |||||| |  ||| ||||||||||    
T  26397631 tagctacagaaactcttggtcctttatcacttaataacactcgatgaaaaacactgacaaaattgtcatttgttataagctgtaacattgacaaataaat 26397532  T
Q  246 tgatataagtatatagtcgttacaatgatatctaattaactatgaagtatg 296  Q
    |  ||||||||||||    ||||||||| |||||  |||||||||||||||    
T  26397531 ttctataagtatata---attacaatgacatctacgtaactatgaagtatg 26397484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 1908220 - 1908264
Alignment:
Q  443 aaacaattcgtcattgatgaaactcgttaactacttgagctcaat 487  Q
    ||||||||| |||||||||||  |||||||| |||||||||||||    
T  1908220 aaacaattcatcattgatgaagttcgttaaccacttgagctcaat 1908264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 537
Target Start/End: Complemental strand, 8353063 - 8352537
Alignment:
Q  21 tgacatgtattctgctaagctaatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatca 120  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||     
T  8353063 tgacatgtattctgctaagctaatatctgtatagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatct 8352964  T
Q  121 agatcatgagaagttccaaagaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgaca 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||| |    
T  8352963 agatcatgggaagttccaaagaaggcagctacagaaactcttgggcctttatgatttgataacacacgatgataaacactactgaaattgtcatttgata 8352864  T
Q  221 caagctgcacgattaacaaataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaa-ttttctccaa 319  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  8352863 caagctgtatgattaacaaataaattgatataagtatatagtcgttacaatgttatctaattaactatgaagtctgacagtaatttcaatttttctccaa 8352764  T
Q  320 aattcagg--------nnnnnnnaaccctctagctctnnnnnnnggggaacccggtatttcaaagtttggtcagaggtaagtaaagtttgactaaaaatt 411  Q
    |||| |||               || |||||||||||         ||| || ||||||||| ||||||||||||||||| |||||| | ||| ||||||    
T  8352763 aatttagggtttttttttgtgttaatcctctagctctaaagaaaaaggaccctggtatttcagagtttggtcagaggtaaataaagtctaactgaaaatt 8352664  T
Q  412 gttccatcaagaatcaaggtgaggttttgcgaaacaattcgtcattgatgaaactcgttaactacttgagctcaattacttagttaattcagctcatttt 511  Q
    |||||||||||||| || || ||||| |  ||||||||| |||||||  ||| |||||||||  ||||||||||||||||   ||||||||||||||       
T  8352663 gttccatcaagaattaaagtcaggttctctgaaacaatttgtcattggagaagctcgttaacctcttgagctcaattactatattaattcagctcataga 8352564  T
Q  512 atatgga-ttgaattgtttatttatat 537  Q
    ||||||| ||||||||||| |||||||    
T  8352563 atatggatttgaattgtttgtttatat 8352537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 41242399 - 41242340
Alignment:
Q  41 taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaa 100  Q
    ||||||||||||||||||| ||||| |||||||| | |||||| || || ||||||||||    
T  41242399 taatatctctatagattggagggttttcttctgataacaattcctttattggaccataaa 41242340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 21074751 - 21074804
Alignment:
Q  444 aacaattcgtcattgatgaaactcgttaactacttgagctcaattacttagtta 497  Q
    |||||||| ||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  21074751 aacaattcttcattgacgaacctcgttaactaattgagctcaattgtttagtta 21074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 49463218 - 49463266
Alignment:
Q  52 tagattggtgggttctcttctgagatcaattctttaataggaccataaa 100  Q
    |||||||||||||| |||||||| | || ||| ||||||||||||||||    
T  49463218 tagattggtgggttttcttctgaaagcagttccttaataggaccataaa 49463266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 28130780 - 28130721
Alignment:
Q  41 taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaa 100  Q
    ||||||||||||||||||| ||||| |||||||| | |||||| || || ||||||||||    
T  28130780 taatatctctatagattggagggttttcttctgataacaattcctttattggaccataaa 28130721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 481
Target Start/End: Complemental strand, 8509692 - 8509654
Alignment:
Q  443 aaacaattcgtcattgatgaaactcgttaactacttgag 481  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  8509692 aaacaattcatcattgatgaaactcattaactacttgag 8509654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 5843673 - 5843640
Alignment:
Q  384 agaggtaagtaaagtttgactaaaaattgttcca 417  Q
    |||||||||||||||||||| |||||||||||||    
T  5843673 agaggtaagtaaagtttgacaaaaaattgttcca 5843640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 13043504 - 13043553
Alignment:
Q  448 attcgtcattgatgaaactcgttaactacttgagctcaattacttagtta 497  Q
    ||||||| |||||||||||| ||||| |||||||||||||| ||| ||||    
T  13043504 attcgtccttgatgaaactcattaaccacttgagctcaattgcttggtta 13043553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 29464977 - 29464909
Alignment:
Q  41 taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatg 109  Q
    |||||||| | |||||||  ||||| |||||||| ||||  || |||||||||||||||||| ||||||    
T  29464977 taatatctttgtagattgccgggttttcttctgaaatcagctccttaataggaccataaatctttgatg 29464909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 34605344 - 34605380
Alignment:
Q  444 aacaattcgtcattgatgaaactcgttaactacttga 480  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  34605344 aacaattcgtcgttgatgaaattcgttaactacttga 34605380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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